Browse Element(s) Details


OsAffx.28368.1.S1_at

Description tigr:9635.m00943
TID=OsAffx.28368.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0979010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09730NANA7+5185068..5186255hypothetical protein
LOC_Os07g09740OsAffx.5275.3.S1_at11/117+5188105..5190099No apical meristem protein
LOC_Os07g09740OsAffx.5275.1.S1_s_at11/117+5188105..5190099No apical meristem protein
LOC_Os07g09750OsAffx.5272.1.S1_at10/117+5190408..5193220hypothetical protein
LOC_Os07g09750Os.24100.1.A1_at1/117+5190408..5193220hypothetical protein
LOC_Os07g09760OsAffx.8923.1.S1_at6/117+5193996..5199218retrotransposon protein, putative, unclassified
LOC_Os07g09760Os.51887.1.S1_x_at1/117+5193996..5199218retrotransposon protein, putative, unclassified
LOC_Os07g09770NANA7+5200617..5205276retrotransposon protein, putative, unclassified
LOC_Os07g09780OsAffx.16179.1.S1_at10/117+5206577..5207660hypothetical protein
LOC_Os07g09790Os.18194.1.S1_at11/117+5209080..5213380hypothetical protein
LOC_Os07g09790OsAffx.28368.1.S1_at10/117+5209080..5213380hypothetical protein
LOC_Os07g09800Os.53087.1.S1_at10/117+5214329..5215314expressed protein
LOC_Os07g09814OsAffx.5273.1.S1_s_at11/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.54048.1.S1_at10/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.46610.1.S1_x_at7/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.54151.1.S1_x_at4/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814OsAffx.5273.1.S1_at4/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.45173.1.S1_x_at2/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.48015.1.A1_x_at2/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.38764.1.S1_x_at1/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814OsAffx.22452.1.S1_x_at1/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.47999.2.A1_x_at1/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814OsAffx.20877.1.S1_at1/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09830OsAffx.5275.1.S1_s_at11/117+5227156..5229276No apical meristem protein
LOC_Os07g09840NANA7+5231227..5232429expressed protein
LOC_Os07g09850OsAffx.16180.1.S1_at11/117+5235477..5238911hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28368.1.S1_at--455--6971NONE
GTACCAACAGGGTTGTGTTCTCCAA
NONE
OsAffx.28368.1.S1_at--931--8991Chr07:5209333..5209357 (25 bp)
TGAAGATCTCCAGATGCTCGGCACA
LOC_Os07g09790
OsAffx.28368.1.S1_at--846--1671Chr07:5209309..5209333 (25 bp)
AGCCTTGCAATTGCGTTGGCCGCTG
LOC_Os07g09790
OsAffx.28368.1.S1_at--497--6611Chr07:5209295..5209319 (25 bp)
GTTGGCCGCTGCTGCAATGGAAGCA
LOC_Os07g09790
OsAffx.28368.1.S1_at--677--9011Chr07:5209283..5209307 (25 bp)
TGCAATGGAAGCACCCTCGAGCATC
LOC_Os07g09790
OsAffx.28368.1.S1_at--516--9371Chr07:5209267..5209291 (25 bp)
TCGAGCATCCATGGTGCGGACTGAA
LOC_Os07g09790
OsAffx.28368.1.S1_at--161--8371Chr07:5209227..5209251 (25 bp)
GGCGATCGACGACTGTTTTAGAACT
LOC_Os07g09790
OsAffx.28368.1.S1_at--744--1811Chr07:5209219..5209243 (25 bp)
ACGACTGTTTTAGAACTGCCACGCC
LOC_Os07g09790
OsAffx.28368.1.S1_at--71--9211Chr07:5209203..5209227 (25 bp)
TGCCACGCCCACAAGGATCAAGTTG
LOC_Os07g09790
OsAffx.28368.1.S1_at--549--31Chr07:5209147..5209171 (25 bp)
ATTGGTTCCCAGACAGTGGTGCAGT
LOC_Os07g09790
OsAffx.28368.1.S1_at--959--7771Chr07:5209130..5209154 (25 bp)
GGTGCAGTTGCTAACCTGGTGCCAA
LOC_Os07g09790
Target Sequence 
GTACCAACAGGGTTGTGTTCTCCAAAAATTGGAACTACACCAAGCAGTAGCAACACCAAGTGATGTATCCAGCGTCACTG
GCAGAATCATTCGTGACCTATCAATGATGGTCATCCCCATTGAGCATCACATGGTTCACAGAGGCCATGGCATCTTTGAT
TTCCAACAGGGTTTGAAGATCTCCAGATGCTCGGCACAGCCTTGCAATTGCGTTGGCCGCTGCTGCAATGGAAGCACCCT
CGAGCATCCATGGTGCGGACTGAAGCCAGTGCGGGACAAGGCGATCGACGACTGTTTTAGAACTGCCACGCCCACAAGGA
TCAAGTTGGGGGATGGAGGAACATCTTTCTGGGTAGATGATTGGTTCCCAGACAGTGGTGCAGTTGCTAACCTGGTGCCA
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28368.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis