Browse Element(s) Details


OsAffx.16181.1.S1_at

Description tigr:9635.m00955
TID=OsAffx.16181.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=RPM1 like protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0991011/11stripe rust resistance protein Yr10, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09870Os.14649.1.S1_at11/117+5246639..5249371F-box domain containing protein, expressed
LOC_Os07g09870Os.36460.2.S1_x_at1/117+5246639..5249371F-box domain containing protein, expressed
LOC_Os07g09880OsAffx.28370.2.S1_at11/117+5250783..5252434expressed protein
LOC_Os07g09880OsAffx.28370.1.S1_x_at1/117+5250783..5252434expressed protein
LOC_Os07g09890Os.3294.1.S1_at11/117+5254686..5258064Hexokinase 1, putative, expressed
LOC_Os07g09900OsAffx.28371.1.S1_at11/117+5261709..5265610NB-ARC domain containing protein
LOC_Os07g09910OsAffx.16181.1.S1_at11/117+5270787..5271719stripe rust resistance protein Yr10, putative
LOC_Os07g09910OsAffx.15202.1.S1_at1/117+5270787..5271719stripe rust resistance protein Yr10, putative
LOC_Os07g09920OsAffx.16182.1.S1_at11/117+5279463..5282008disease resistance protein RPM1 homolog, putative
LOC_Os07g09930Os.43567.1.S1_x_at8/117+5284091..5284950transposon protein, putative, unclassified
LOC_Os07g09930Os.29987.1.S1_at5/117+5284091..5284950transposon protein, putative, unclassified
LOC_Os07g09930Os.38172.1.S1_x_at2/117+5284091..5284950transposon protein, putative, unclassified
LOC_Os07g09940OsAffx.5276.1.S1_at11/117+5291221..5292186stripe rust resistance protein Yr10, putative

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16181.1.S1_at--296--8671Chr07:5271232..5271256 (25 bp)
TGTGGTTCGTCCCAGCTTCGACTAC
LOC_Os07g09910
OsAffx.16181.1.S1_at--1013--4891Chr07:5271195..5271219 (25 bp)
GCTTAGCAAGCTGGTCGGCGTCGAC
LOC_Os07g09910
OsAffx.16181.1.S1_at--964--7211Chr07:5271176..5271200 (25 bp)
GTCGACGACCAGGTGCAGCATTTGT
LOC_Os07g09910
OsAffx.16181.1.S1_at--311--6451Chr07:5271134..5271158 (25 bp)
GATCAGAAGCTGACGAGTGACAATC
LOC_Os07g09910
OsAffx.16181.1.S1_at--611--2231Chr07:5271115..5271139 (25 bp)
ACAATCAGCGTGACGTGAGTCTCAA
LOC_Os07g09910
OsAffx.16181.1.S1_at--163--2931Chr07:5270963..5270987 (25 bp)
AAGGACCTCGGCAGACTGCTCAAGC
LOC_Os07g09910
OsAffx.16181.1.S1_at--263--2791Chr07:5270931..5270955 (25 bp)
TAAGAAGGTCGTGAGGGTTACAAGC
LOC_Os07g09910
OsAffx.16181.1.S1_at--215--5011Chr07:5270886..5270910 (25 bp)
GCAGGAATTGCATAACATCGACGAA
LOC_Os07g09910
OsAffx.16181.1.S1_at--235--691Chr07:5270860..5270884 (25 bp)
ATGACGTGGACGAGCTAGCGATGAT
LOC_Os07g09910
OsAffx.16181.1.S1_at--890--6291Chr07:5270841..5270865 (25 bp)
GATGATGCTCGGAGATTGTCTCGAT
LOC_Os07g09910
OsAffx.16181.1.S1_at--648--851Chr07:5270818..5270842 (25 bp)
ATGGCAAGAGGTACACGCACCACCC
LOC_Os07g09910
Target Sequence 
TGTGGTTCGTCCCAGCTTCGACTACGCCCTCCACCGCGCTTAGCAAGCTGGTCGGCGTCGACGACCAGGTGCAGCATTTG
TCCGATCTGGTGAAGTCGGATCAGAAGCTGACGAGTGACAATCAGCGTGACGTGAGTCTCAAGGTGTTCTGCATCGTGGG
GTTCGCGGGGCTCGGGAAGACGACGCTTGCCATGGAGGTTTGCAGGAGCCTGGAGGAGGAGTTTGCCTGCCAGGCAATGG
TGCCGGTGTCTCAGGTGTTCGACGCCGGCAAGGACCTCGGCAGACTGCTCAAGCAGATAATTAAGAAGGTCGTGAGGGTT
ACAAGCGGAAGGGGGCTGCAAGAAGAGCAGGAATTGCATAACATCGACGAAGATGACGTGGACGAGCTAGCGATGATGCT
CGGAGATTGTCTCGATGGCAAGAGGTACACGCACCACCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16181.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis