Browse Element(s) Details


OsAffx.16182.1.S1_at

Description tigr:9635.m00956
TID=OsAffx.16182.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0992011/11disease resistance protein RPM1 homolog, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09890Os.3294.1.S1_at11/117+5254686..5258064Hexokinase 1, putative, expressed
LOC_Os07g09900OsAffx.28371.1.S1_at11/117+5261709..5265610NB-ARC domain containing protein
LOC_Os07g09910OsAffx.16181.1.S1_at11/117+5270787..5271719stripe rust resistance protein Yr10, putative
LOC_Os07g09910OsAffx.15202.1.S1_at1/117+5270787..5271719stripe rust resistance protein Yr10, putative
LOC_Os07g09920OsAffx.16182.1.S1_at11/117+5279463..5282008disease resistance protein RPM1 homolog, putative
LOC_Os07g09930Os.43567.1.S1_x_at8/117+5284091..5284950transposon protein, putative, unclassified
LOC_Os07g09930Os.29987.1.S1_at5/117+5284091..5284950transposon protein, putative, unclassified
LOC_Os07g09930Os.38172.1.S1_x_at2/117+5284091..5284950transposon protein, putative, unclassified
LOC_Os07g09940OsAffx.5276.1.S1_at11/117+5291221..5292186stripe rust resistance protein Yr10, putative
LOC_Os07g09950OsAffx.16183.1.S1_at11/117+5301791..5303053F-box domain containing protein, expressed
LOC_Os07g09960NANA7+5305626..5306015hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16182.1.S1_at--972--5311Chr07:5280025..5280049 (25 bp)
GAAGGTGCTCCCTCTATAGATTGAA
LOC_Os07g09920
OsAffx.16182.1.S1_at--527--3291Chr07:5279938..5279962 (25 bp)
CAAAGTTACTCCGATACCTCTGCAT
LOC_Os07g09920
OsAffx.16182.1.S1_at--293--7851Chr07:5279909..5279933 (25 bp)
GGTACCATCGACAGAATTCCAGGTT
LOC_Os07g09920
OsAffx.16182.1.S1_at--251--91Chr07:5279894..5279918 (25 bp)
ATTCCAGGTTGGGTGCAGTCACTCA
LOC_Os07g09920
OsAffx.16182.1.S1_at--1116--6491Chr07:5279841..5279865 (25 bp)
GATATACCTTCCCAGCGACGAAATA
LOC_Os07g09920
OsAffx.16182.1.S1_at--685--5591Chr07:5279822..5279846 (25 bp)
GAAATATACGGTGCCCTGTACAAGC
LOC_Os07g09920
OsAffx.16182.1.S1_at--165--5291Chr07:5279684..5279708 (25 bp)
GAAGGTACGCCACAAGTTGTCCGGT
LOC_Os07g09920
OsAffx.16182.1.S1_at--969--5991Chr07:5279633..5279657 (25 bp)
GAGACCCTGGTCATGTATTTCCATG
LOC_Os07g09920
OsAffx.16182.1.S1_at--961--7411Chr07:5279587..5279611 (25 bp)
GTGTTGAGCACTTGACCAGCCTTAA
LOC_Os07g09920
OsAffx.16182.1.S1_at--177--1651Chr07:5279570..5279594 (25 bp)
AGCCTTAAGGATGTCCGGGTCCGTG
LOC_Os07g09920
OsAffx.16182.1.S1_at--870--6171Chr07:5279498..5279522 (25 bp)
GAGGAGAACGCAAGACGCCACAGCT
LOC_Os07g09920
Target Sequence 
GAAGGTGCTCCCTCTATAGATTGAAAGTCGAGGACATGATGCCTGATTCAAACAACATGAACTTTCTCCTCAACCTCCCC
TCACCACCAAAGTTACTCCGATACCTCTGCATCGGTGGTACCATCGACAGAATTCCAGGTTGGGTGCAGTCACTCACTCA
CCTTGTCCATGTTGAGTTTTGGTGGATATACCTTCCCAGCGACGAAATATACGGTGCCCTGTACAAGCTGCCTAGCCTGA
CAAAGATCAGCTTGGATAGGTGGTGCTGCAGCGAAGATGAGCTGGTGGCGCGCACCGACTTCAAGTTCCCGCTGCTCAAG
GTGCTGTCCTTTGTTCCAGATGAAGGTACGCCACAAGTTGTCCGGTTTGAGGAAGGAGCCATGCCAAAGCTGGAGACCCT
GGTCATGTATTTCCATGACAAGAAAAGGTCCCTTGAAGGTGTTGAGCACTTGACCAGCCTTAAGGATGTCCGGGTCCGTG
GTTCCAGGGATAACCATGAAATGGGAACGGCAGTGATCCAGCTGAAGGAGGAGAACGCAAGACGCCACAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16182.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis