Browse Element(s) Details


OsAffx.16183.1.S1_at

Description tigr:9635.m00959
TID=OsAffx.16183.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0995011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09920OsAffx.16182.1.S1_at11/117+5279463..5282008disease resistance protein RPM1 homolog, putative
LOC_Os07g09930Os.43567.1.S1_x_at8/117+5284091..5284950transposon protein, putative, unclassified
LOC_Os07g09930Os.29987.1.S1_at5/117+5284091..5284950transposon protein, putative, unclassified
LOC_Os07g09930Os.38172.1.S1_x_at2/117+5284091..5284950transposon protein, putative, unclassified
LOC_Os07g09940OsAffx.5276.1.S1_at11/117+5291221..5292186stripe rust resistance protein Yr10, putative
LOC_Os07g09950OsAffx.16183.1.S1_at11/117+5301791..5303053F-box domain containing protein, expressed
LOC_Os07g09960NANA7+5305626..5306015hypothetical protein
LOC_Os07g09970Os.9151.1.S1_at10/117+5312128..5316409Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g09970OsAffx.16185.1.S1_at8/117+5312128..5316409Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g09980NANA7+5321425..5321814hypothetical protein
LOC_Os07g09990OsAffx.17842.1.S1_at4/117+5326494..5331360retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g09990OsAffx.31892.2.S1_at2/117+5326494..5331360retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g09990OsAffx.31892.2.S1_x_at1/117+5326494..5331360retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16183.1.S1_at--854--3991Chr07:5302295..5302319 (25 bp)
CGTGCACTTCTTGGCAGTTGACATA
LOC_Os07g09950
OsAffx.16183.1.S1_at--477--3191Chr07:5302189..5302213 (25 bp)
CAATGGAGGCCGCTTCTCCGTGGAC
LOC_Os07g09950
OsAffx.16183.1.S1_at--726--3731Chr07:5302162..5302186 (25 bp)
CTCAACATCCATCAGATCCAACAAG
LOC_Os07g09950
OsAffx.16183.1.S1_at--44--4331Chr07:5302120..5302144 (25 bp)
CCATTGCTGACCTTGACCGAGCTGA
LOC_Os07g09950
OsAffx.16183.1.S1_at--472--4071Chr07:5302103..5302127 (25 bp)
CGAGCTGAAAGGCTTCTTGGTTACA
LOC_Os07g09950
OsAffx.16183.1.S1_at--469--3611Chr07:5302088..5302112 (25 bp)
CTTGGTTACAGTTCATCGCGATCGA
LOC_Os07g09950
OsAffx.16183.1.S1_at--169--9351Chr07:5302073..5302097 (25 bp)
TCGCGATCGATCTCATCAATCATCA
LOC_Os07g09950
OsAffx.16183.1.S1_at--356--9551Chr07:5302040..5302064 (25 bp)
TCTTTGGTTTCTGATCGACTCTGAA
LOC_Os07g09950
OsAffx.16183.1.S1_at--890--9831Chr07:5301994..5302018 (25 bp)
TACAAAATTCAGATCCACCTTCGCC
LOC_Os07g09950
OsAffx.16183.1.S1_at--529--3151Chr07:5301963..5301987 (25 bp)
AATTCTACGCGCATCCATTGTTGGT
LOC_Os07g09950
OsAffx.16183.1.S1_at--906--991Chr07:5301928..5301952 (25 bp)
AGGATGATCGTGTTCTGCGTGCGAC
LOC_Os07g09950
Target Sequence 
CGTGCACTTCTTGGCAGTTGACATACCCCTCCCCTTCCTCCCCTTCGAGCACGACGACGACGACATCCACCACGGCGCCA
TTGCTCGCTTCGACCTCGACACCGAGCAATGGAGGCCGCTTCTCCGTGGACCACTCAACATCCATCAGATCCAACAAGAC
AACGATCTGTCGCCGCCATTGCTGACCTTGACCGAGCTGAAAGGCTTCTTGGTTACAGTTCATCGCGATCGATCTCATCA
ATCATCATCAATGGATCTTTGGTTTCTGATCGACTCTGAAGAAGAAACCTGGGTCAAAGAATACAAAATTCAGATCCACC
TTCGCCCTCGAGAATTCTACGCGCATCCATTGTTGGTGTTGGATGAGAGGATGATCGTGTTCTGCGTGCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16183.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis