Browse Element(s) Details


OsAffx.16185.1.S1_at

Description tigr:9635.m00961
TID=OsAffx.16185.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g099708/11Protease inhibitor/seed storage/LTP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09940OsAffx.5276.1.S1_at11/117+5291221..5292186stripe rust resistance protein Yr10, putative
LOC_Os07g09950OsAffx.16183.1.S1_at11/117+5301791..5303053F-box domain containing protein, expressed
LOC_Os07g09960NANA7+5305626..5306015hypothetical protein
LOC_Os07g09970Os.9151.1.S1_at10/117+5312128..5316409Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g09970OsAffx.16185.1.S1_at8/117+5312128..5316409Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g09980NANA7+5321425..5321814hypothetical protein
LOC_Os07g09990OsAffx.17842.1.S1_at4/117+5326494..5331360retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g09990OsAffx.31892.2.S1_at2/117+5326494..5331360retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g09990OsAffx.31892.2.S1_x_at1/117+5326494..5331360retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g10000OsAffx.28373.1.S1_at11/117+5338209..5339504hypothetical protein
LOC_Os07g10010NANA7+5340865..5343418hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0016020cellular_componentmembrane
GO:0031225cellular_componentanchored to membrane
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16185.1.S1_at--671--9051NONE
TGCATCCCCTGGTGGCAGTGCAGCC
NONE
OsAffx.16185.1.S1_at--270--8271Chr07:5314329..5314353 (25 bp)
GGCAGTGCAGCCAACCAAATATCTT
LOC_Os07g09970
OsAffx.16185.1.S1_at--136--1131Chr07:5314332..5314356 (25 bp)
AGTGCAGCCAACCAAATATCTTTTG
LOC_Os07g09970
OsAffx.16185.1.S1_at--35--8551Chr07:5314355..5314379 (25 bp)
TGGAGATTTAACTCCCCAAGCTGTT
LOC_Os07g09970
OsAffx.16185.1.S1_at--755--6531Chr07:5314359..5314383 (25 bp)
GATTTAACTCCCCAAGCTGTTGATG
LOC_Os07g09970
OsAffx.16185.1.S1_at--461--9811Chr07:5314363..5314387 (25 bp)
TAACTCCCCAAGCTGTTGATGTGAA
LOC_Os07g09970
OsAffx.16185.1.S1_at--1057--9291Chr07:5314367..5314391 (25 bp)
TCCCCAAGCTGTTGATGTGAACATG
LOC_Os07g09970
OsAffx.16185.1.S1_at--66--5491Chr07:5314385..5314409 (25 bp)
GAACATGTCGATTAAGAGCAAGTAT
LOC_Os07g09970
OsAffx.16185.1.S1_at--988--5171NONE
GCAAGTATAATATGGGTGAACAAAC
NONE
OsAffx.16185.1.S1_at--226--7333Chr07:5315163..5315187 (25 bp)
GTGAACAAACCTTTAGTCACCAAGG
LOC_Os07g09970
OsAffx.16185.1.S1_at--1152--10051NONE
TAGTCACCAAGGTGGGTCAAGCGCA
NONE
Target Sequence 
TGCATCCCCTGGTGGCAGTGCAGCCAACCAAATATCTTTTGGAGATTTAACTCCCCAAGCTGTTGATGTGAACATGTCGA
TTAAGAGCAAGTATAATATGGGTGAACAAACCTTTAGTCACCAAGGTGGGTCAAGCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16185.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis