Browse Element(s) Details


OsAffx.5276.1.S1_at

Description tigr:9635.m00958
TID=OsAffx.5276.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0994011/11stripe rust resistance protein Yr10, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09910OsAffx.16181.1.S1_at11/117+5270787..5271719stripe rust resistance protein Yr10, putative
LOC_Os07g09910OsAffx.15202.1.S1_at1/117+5270787..5271719stripe rust resistance protein Yr10, putative
LOC_Os07g09920OsAffx.16182.1.S1_at11/117+5279463..5282008disease resistance protein RPM1 homolog, putative
LOC_Os07g09930Os.43567.1.S1_x_at8/117+5284091..5284950transposon protein, putative, unclassified
LOC_Os07g09930Os.29987.1.S1_at5/117+5284091..5284950transposon protein, putative, unclassified
LOC_Os07g09930Os.38172.1.S1_x_at2/117+5284091..5284950transposon protein, putative, unclassified
LOC_Os07g09940OsAffx.5276.1.S1_at11/117+5291221..5292186stripe rust resistance protein Yr10, putative
LOC_Os07g09950OsAffx.16183.1.S1_at11/117+5301791..5303053F-box domain containing protein, expressed
LOC_Os07g09960NANA7+5305626..5306015hypothetical protein
LOC_Os07g09970Os.9151.1.S1_at10/117+5312128..5316409Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g09970OsAffx.16185.1.S1_at8/117+5312128..5316409Protease inhibitor/seed storage/LTP family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5276.1.S1_at--666--4651Chr07:5291756..5291780 (25 bp)
GCGTGCGTTACGAAGTCGACGGCCA
LOC_Os07g09940
OsAffx.5276.1.S1_at--281--10011Chr07:5291632..5291656 (25 bp)
TAGCAAGTTCTTGGGCATCGGCGAC
LOC_Os07g09940
OsAffx.5276.1.S1_at--721--5871Chr07:5291550..5291574 (25 bp)
GAGCCCGACGTTAGTCTCAAGGTGT
LOC_Os07g09940
OsAffx.5276.1.S1_at--688--971Chr07:5291456..5291480 (25 bp)
AGGAGTTCCCATGCCAGGCAATGGT
LOC_Os07g09940
OsAffx.5276.1.S1_at--452--8731Chr07:5291426..5291450 (25 bp)
TGTCTCAGGCGTTCGACTCCAGAAA
LOC_Os07g09940
OsAffx.5276.1.S1_at--1020--5831Chr07:5291400..5291424 (25 bp)
GACCTCAGTGGATTGCTTAAGCGCA
LOC_Os07g09940
OsAffx.5276.1.S1_at--218--631Chr07:5291376..5291400 (25 bp)
ATGCTGCAGCAGATCGTGAGGGTTC
LOC_Os07g09940
OsAffx.5276.1.S1_at--627--7831Chr07:5291356..5291380 (25 bp)
GGTTCGAAGGGACCTGCAACTGCAA
LOC_Os07g09940
OsAffx.5276.1.S1_at--111--5431Chr07:5291326..5291350 (25 bp)
GAAGCCATTGGCTAACATCGACGAC
LOC_Os07g09940
OsAffx.5276.1.S1_at--639--591Chr07:5291297..5291321 (25 bp)
ATGCCGACTGGCTAGCGATGAAGCT
LOC_Os07g09940
OsAffx.5276.1.S1_at--703--6151Chr07:5291251..5291275 (25 bp)
GAGGTATGGACGTACTCTTGCGCTG
LOC_Os07g09940
Target Sequence 
GCGTGCGTTACGAAGTCGACGGCCAGGCACTGCGCCCCTCCGTGTGGTTCGTCCCTGCCGCCACCGCGGCGACGATGTCC
TCCGCCGCGCACACGCTCCGCCTCCACCCCGCGAACGAATACCCTAGCAAGTTCTTGGGCATCGGCGACCAGGTGCAGCG
TTTGTCCGATCTGGTGAAATCGAATAGGCTGACGAGTGACAACAATGAGCCCGACGTTAGTCTCAAGGTGTTCTCCATCG
TGGGGTTCGGTGGTCTCGGGAAGACGACGCTTGCCATGGAGGTTTGCCGGAACCTGGAGGAGGAGTTCCCATGCCAGGCA
ATGGTGTCGGTGTCTCAGGCGTTCGACTCCAGAAAGGACCTCAGTGGATTGCTTAAGCGCATGCTGCAGCAGATCGTGAG
GGTTCGAAGGGACCTGCAACTGCAAGAAGAGAAGCCATTGGCTAACATCGACGACGGCGATGCCGACTGGCTAGCGATGA
AGCTCAGAGAGCATCTCGCAGACAGGAGGTATGGACGTACTCTTGCGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5276.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis