Browse Element(s) Details


Os.5952.1.S1_at

Description gb:AK103101.1
DB_XREF= gi:32988310
TID=Os.5952.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5952 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative seryl-tRNA synthetase (B1144D11.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033118N18, full insert sequence.
FL= gb:AK059522.1 gb:AK103101.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1019011/11Seryl-tRNA synthetase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10150Os.57173.1.S1_at11/113+5130083..5131155uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os03g10160OsAffx.3182.1.S1_at11/113+5134654..5134890hypothetical protein
LOC_Os03g10170NANA3+5136621..5137763hypothetical protein
LOC_Os03g10180Os.14877.1.S1_at10/113+5140681..5145886expressed protein
LOC_Os03g10190Os.5952.1.S1_at11/113+5146424..5149812Seryl-tRNA synthetase, putative, expressed
LOC_Os03g10190Os.5952.4.S1_x_at7/113+5146424..5149812Seryl-tRNA synthetase, putative, expressed
LOC_Os03g10200OsAffx.3183.1.S1_at11/113+5154255..5158348UPF0326 protein hag1, putative, expressed
LOC_Os03g10200Os.6426.1.S1_at10/113+5154255..5158348UPF0326 protein hag1, putative, expressed
LOC_Os03g10210Os.9086.1.S1_at11/113+5159829..5161302Homeobox domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006434biological_processseryl-tRNA aminoacylation
GO:0007005biological_processmitochondrion organization and biogenesis
GO:0009658biological_processchloroplast organization and biogenesis
GO:0043039biological_processtRNA aminoacylation
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0004828molecular_functionserine-tRNA ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5952.1.S1_at--374--3571Chr03:5149450..5149474 (25 bp)
CATTTGGGTATAATCTTGACAGGGA
LOC_Os03g10190
Os.5952.1.S1_at--334--2131Chr03:5149569..5149593 (25 bp)
ACAGTTTTGACTCTCATTTTGGTGT
LOC_Os03g10190
Os.5952.1.S1_at--123--10251Chr03:5149586..5149610 (25 bp)
TTTGGTGTCTTGATTAGCCCATTGT
LOC_Os03g10190
Os.5952.1.S1_at--237--3611Chr03:5149594..5149618 (25 bp)
CTTGATTAGCCCATTGTCTGACCAT
LOC_Os03g10190
Os.5952.1.S1_at--1123--6991Chr03:5149619..5149643 (25 bp)
GTACTGGCACAGTGATATTGCATAG
LOC_Os03g10190
Os.5952.1.S1_at--4--9071Chr03:5149637..5149661 (25 bp)
TGCATAGAATGTCTGGCAATCTTGG
LOC_Os03g10190
Os.5952.1.S1_at--400--7931Chr03:5149660..5149684 (25 bp)
GGATATCTGCGTTTTGTTTACCGTA
LOC_Os03g10190
Os.5952.1.S1_at--699--2011Chr03:5149721..5149745 (25 bp)
ACTAATTTGTGGCATACAGTGACGC
LOC_Os03g10190
Os.5952.1.S1_at--689--7371Chr03:5149739..5149763 (25 bp)
GTGACGCTATTACTACTTGTCTGAA
LOC_Os03g10190
Os.5952.1.S1_at--700--6791Chr03:5149769..5149793 (25 bp)
GTTATAATCGGCTTGTTATGGCCAA
LOC_Os03g10190
Os.5952.1.S1_at--295--8451Chr03:5149787..5149811 (25 bp)
TGGCCAATAAAGTTTTATTCTCGTC
LOC_Os03g10190
Target Sequence 
CATTTGGGTATAATCTTGACAGGGAAATGCTATNTGAGCTAGATGAGGAATCAACAAAGATTTCTTGCTTTCAGNCACTA
CTGGATATTATTCATACTTATAGCAATGATCATGATGTTACAGTTTTGACTCTCATTTTGGTGTCTTGATTAGCCCATTG
TCTGACCATGTACTGGCACAGTGATATTGCATAGAATGTCTGGCAATCTTGGATATCTGCGTTTTGTTTACCGTAAAAGA
TGTATTCATTTTCAAGGCCTTTCGTGCCTATACTAATTTGTGGCATACAGTGACGCTATTACTACTTGTCTGAATATTTG
TTATAATCGGCTTGTTATGGCCAATAAAGTTTTATTCTCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5952.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis