Browse Element(s) Details


Os.5960.1.S1_at

Description gb:AK068709.1
DB_XREF= gi:32978726
TID=Os.5960.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5960 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-204-E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013159G01, full insert sequence.
FL= gb:AK068709.1 gb:AK104134.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3758011/11ChaC-like protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g37500Os.1215.1.S1_at11/114+22111117..22113470Glutamate decarboxylase, putative, expressed
LOC_Os04g37510OsAffx.26362.1.S1_at11/114+22113602..22114033uncharacterized plant-specific domain TIGR01568 family protein
LOC_Os04g37520OsAffx.4008.1.S1_at11/114+22115957..22118200expressed protein
LOC_Os04g37520Os.49478.1.S1_at1/114+22115957..22118200expressed protein
LOC_Os04g37530OsAffx.26363.1.S1_at11/114+22118427..22120817expressed protein
LOC_Os04g37540Os.17444.1.S1_a_at11/114+22121721..22127414expressed protein
LOC_Os04g37550Os.18235.1.S1_at10/114+22128884..22130725Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g37560OsAffx.14176.1.S1_at11/114+22131351..22131599hypothetical protein
LOC_Os04g37570OsAffx.26364.1.S1_at11/114+22134740..22136134Eukaryotic aspartyl protease family protein
LOC_Os04g37580Os.5960.1.S1_at11/114+22136263..22138900ChaC-like protein, expressed
LOC_Os04g37580Os.5217.1.S1_at7/114+22136263..22138900ChaC-like protein, expressed
LOC_Os04g37590OsAffx.14177.1.S1_at11/114+22139652..22142503F-box family protein, putative
LOC_Os04g37600Os.12776.1.S1_at11/114+22143167..22148131Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os04g37619Os.1605.1.S1_at10/114+22150569..22157739Zeaxanthin epoxidase, chloroplast precursor, putative, expressed
LOC_Os04g37630Os.53639.2.A1_at11/114+22157961..22168826expressed protein
LOC_Os04g37630Os.54686.1.S1_at10/114+22157961..22168826expressed protein
LOC_Os04g37630Os.48676.1.S1_at10/114+22157961..22168826expressed protein
LOC_Os04g37630Os.49908.2.A1_at1/114+22157961..22168826expressed protein
LOC_Os04g37640Os.57107.1.S1_at10/114+22162267..22164458Xyloglucan fucosyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5960.1.S1_at--37--3611Chr04:22136936..22136960 (25 bp)
CTTGGTCCTGCACCGCTGGAAGAAA
LOC_Os04g37580
Os.5960.1.S1_at--997--171Chr04:22136816..22136840 (25 bp)
ATTTACCTAGCTGAAGGCCCATCTG
LOC_Os04g37580
Os.5960.1.S1_at--570--8991Chr04:22136805..22136829 (25 bp)
TGAAGGCCCATCTGGACCTAACAAA
LOC_Os04g37580
Os.5960.1.S1_at--1030--3011Chr04:22136630..22136654 (25 bp)
AATGCTGTGCGCAAGTATCCAGACA
LOC_Os04g37580
Os.5960.1.S1_at--605--5631Chr04:22136609..22136633 (25 bp)
GACACTGCGGTATCTTGCTGAAGGA
LOC_Os04g37580
Os.5960.1.S1_at--791--2291Chr04:22136501..22136525 (25 bp)
AAATGTGGACAGCTTCTGCCGATAT
LOC_Os04g37580
Os.5960.1.S1_at--292--4511Chr04:22136484..22136508 (25 bp)
GCCGATATTCTTGTCCATCTGTAGA
LOC_Os04g37580
Os.5960.1.S1_at--361--2391Chr04:22136415..22136439 (25 bp)
AAACTGCCACATTACTGCGTTGGGA
LOC_Os04g37580
Os.5960.1.S1_at--796--8671Chr04:22136400..22136424 (25 bp)
TGCGTTGGGAATCAAACCCTTCTTT
LOC_Os04g37580
Os.5960.1.S1_at--39--3512Chr06:3167829..3168285 (25 bp)
CATGGTCTAGTTAGCTGCAGCCTGC
NONE
Os.5960.1.S1_at--430--7831Chr04:22136286..22136310 (25 bp)
GGTCACTCGACCATGCTTTGTCGTA
LOC_Os04g37580
Target Sequence 
CTTGGTCCTGCACCGCTGGAAGAAATGGCCAAGCAAATTTACCTAGCTGAAGGCCCATCTGGACCTAACAAAGAGTACCT
GTTCAAACTTGAGGATGCATTGAACAAAATAGGAGTTGTTGATCCACATGTCCAGGATCTGGCAAATGCTGTGCGCAAGT
ATCCAGACACTGCGGTATCTTGCTGAAGGATGGCATTTCCCTCCTCTTTGGGAGGGTAAAAATATAACTGAAGGAAGTTA
GATCAATTCATGCTCAAACATCTTGAATCTTGTAAATGTGGACAGCTTCTGCCGATATTCTTGTCCATCTGTAGATGGCA
GTAGAAAATTCGCAATAAGGATTTAAGTTGGGGGTATGAAAACTGCCACATTACTGCGTTGGGAATCAAACCCTTCTTTT
TTACTTTCAAAACAAGATTGTTCTCTACTTCTCTTATATTGAAGCATAATCACTGTGCATGGTCTAGTTAGCTGCAGCCT
GCAGGCTTGGTCACTCGACCATGCTTTGTCGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5960.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis