Browse Element(s) Details


Os.5986.1.S1_at

Description gb:AK069761.1
DB_XREF= gi:32979785
TID=Os.5986.1
CNT=27
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5986 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023028D17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023028D17, full insert sequence.
FL= gb:AK069761.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4440011/11Glutathione S-transferase, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44360Os.27379.1.S1_at11/118+27783470..27789774Male sterility protein, expressed
LOC_Os08g44360OsAffx.1155.1.S1_at1/118+27783470..27789774Male sterility protein, expressed
LOC_Os08g44370Os.8574.1.S1_at11/118+27785933..27793862Inosine-uridine preferring nucleoside hydrolase family protein, expressed
LOC_Os08g44380Os.37672.1.S1_at11/118+27796506..2779983460S ribosomal protein L10a-1, putative, expressed
LOC_Os08g44380Os.12334.1.S1_x_at5/118+27796506..2779983460S ribosomal protein L10a-1, putative, expressed
LOC_Os08g44390Os.37533.1.S1_at11/118+27798872..27801533EF hand family protein, expressed
LOC_Os08g44400Os.5986.1.S1_at11/118+27805389..27808316Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os08g44410NANA8+27809197..27809775Harpin-induced protein 1 containing protein, expressed
LOC_Os08g44420Os.48045.1.S1_at4/118+27810155..27815928125 kDa kinesin-related protein, putative, expressed
LOC_Os08g44430Os.10833.1.S1_at11/118+27823458..27826135synaptobrevin family protein, putative, expressed
LOC_Os08g44440Os.12998.1.S1_at11/118+27826616..27830199Multiple myeloma tumor-associated protein 2 homolog, putative, expressed
LOC_Os08g44450Os.12334.1.S1_x_at11/118+27830358..2783290060S ribosomal protein L10a-1, putative, expressed
LOC_Os08g44450Os.12334.2.S1_at5/118+27830358..2783290060S ribosomal protein L10a-1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5986.1.S1_at--383--1071Chr08:27807430..27807454 (25 bp)
AGGGTTCTAAGTATACTCCTGCAAA
LOC_Os08g44400
Os.5986.1.S1_at--899--10051Chr08:27807606..27807630 (25 bp)
TAGTACGAGAGACCCTTGTTGAATT
LOC_Os08g44400
Os.5986.1.S1_at--593--10431Chr08:27807629..27807653 (25 bp)
TTAGAGTTGCCACACTTGCTACACA
LOC_Os08g44400
Os.5986.1.S1_at--1022--8251Chr08:27807822..27807846 (25 bp)
GGCAGCCCCAGGAGACAGGAATTTT
LOC_Os08g44400
Os.5986.1.S1_at--1077--2251Chr08:27807852..27807953 (25 bp)
AAATACGGCATTTTCCAGGCTCCTT
LOC_Os08g44400
Os.5986.1.S1_at--236--891Chr08:27807945..27807969 (25 bp)
AGGCTCCTTATATCGAAGATCCTAA
LOC_Os08g44400
Os.5986.1.S1_at--302--1311Chr08:27807981..27808005 (25 bp)
AGATGTTCGAGAGCGCTGATATCAT
LOC_Os08g44400
Os.5986.1.S1_at--620--6511Chr08:27807998..27808022 (25 bp)
GATATCATAGACTACCTGAGGGCCA
LOC_Os08g44400
Os.5986.1.S1_at--449--6111Chr08:27808015..27808039 (25 bp)
GAGGGCCACATATGCGGCTTGAGAA
LOC_Os08g44400
Os.5986.1.S1_at--80--651Chr08:27808119..27808143 (25 bp)
ATGCATTCTCTCTATTCTTATGTTG
LOC_Os08g44400
Os.5986.1.S1_at--632--1251Chr08:27808145..27808169 (25 bp)
AGATTCTCTCTATTCTTTACAAGGA
LOC_Os08g44400
Target Sequence 
AGGGTTCTAAGTATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGGGCATATGAGGGATCTCCTTTCTGTAAA
ATAGTACGAGAGACCCTTGTTGAATTAGAGTTGCCACACTTGCTACACAGCTGTGCACGCGGCAGCCCCAGGAGACAGGA
ATTTTTGAAGAAATACGGCATTTTCCAGGCTCCTTATATCGAAGATCCTAACACAGGGGTCAAGATGTTCGAGAGCGCTG
ATATCATAGACTACCTGAGGGCCACATATGCGGCTTGAGAATCCCNTTCTACTTCTCATATCTCAAGTGTCAATATGCAG
TATATACTACACTGATAACCTGACATATCTCAAGTGTTAATATGCATTCTCTCTATTCTTATGTTGTAGATTCTCTCTAT
TCTTTACAAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5986.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis