Browse Element(s) Details


Os.6057.1.A1_at

Description gb:AK106434.1
DB_XREF= gi:32991643
TID=Os.6057.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6057 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-C11, full insert sequence.
FL= gb:AK106434.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0481011/11serine esterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04780Os.7610.1.S1_a_at11/118+2379191..2382932amine oxidase, flavin-containing family protein, expressed
LOC_Os08g04790Os.8351.1.S1_at11/118+2383385..2386651glycosyltransferase family 14 protein, putative, expressed
LOC_Os08g04790Os.51140.1.S1_at11/118+2383385..2386651glycosyltransferase family 14 protein, putative, expressed
LOC_Os08g04800OsAffx.16830.1.S1_at11/118+2399689..2401176Lipase family protein, expressed
LOC_Os08g04810Os.6057.1.A1_at11/118+2405983..2412333serine esterase family protein, expressed
LOC_Os08g04830Os.14088.1.S1_at10/118+2421104..2424827expressed protein
LOC_Os08g04840Os.11458.1.S1_at11/118+2427488..2430411myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6057.1.A1_at--364--5551Chr08:2408765..2408909 (25 bp)
GAAAGACTGAGCTGCCTAAGTGGGA
LOC_Os08g04810
Os.6057.1.A1_at--950--10611Chr08:2408662..2408686 (25 bp)
TTCGGCAACAGTTTGTGATTCAGAC
LOC_Os08g04810
Os.6057.1.A1_at--860--2831Chr08:2406478..2406502 (25 bp)
AAGTAGATGTTAGCTTCCATACCAG
LOC_Os08g04810
Os.6057.1.A1_at--893--10671Chr08:2406464..2406488 (25 bp)
TTCCATACCAGCATGCAGAGATTTG
LOC_Os08g04810
Os.6057.1.A1_at--1097--5111Chr08:2406442..2406461 (20 bp)
GCACACAGCATAATCCAGGTCAAGT
LOC_Os08g04810
Os.6057.1.A1_at--844--5291Chr08:2406277..2406301 (25 bp)
GAAGGCGCGGATGTCATACAGCACA
LOC_Os08g04810
Os.6057.1.A1_at--1010--1491Chr08:2406258..2406282 (25 bp)
AGCACATAATAGACCACTTCCAAGT
LOC_Os08g04810
Os.6057.1.A1_at--990--6491Chr08:2406231..2406255 (25 bp)
GATAGTTCCTCACTCTTGGAAACAT
LOC_Os08g04810
Os.6057.1.A1_at--592--1451Chr08:2406064..2406088 (25 bp)
AGAATGGCCACTGTTGACCTGACAA
LOC_Os08g04810
Os.6057.1.A1_at--851--10751Chr08:2406051..2406075 (25 bp)
TTGACCTGACAATGTTCATTTCCCC
LOC_Os08g04810
Os.6057.1.A1_at--195--4991Chr08:2405993..2406017 (25 bp)
GCATGAGATATACGTCAGGCACCCT
LOC_Os08g04810
Target Sequence 
GAAAGACTGAGCTGCCTAAGTGGGAGGAATCGATATCTGAAAAGTACCCCCACATTGTACATGAGGAATACTCAGAAGAA
CTCGGTGATGAAACATGTCAAAATTCGGCAACAGTTTGTGATTCAGACATATTGGAAGAAAAAATGGTGACAGGACTTCG
NACGAGTATCATGGGAAAAAGTAGATGTTAGCTTCCATACCAGCATGCAGAGATTTGCTGCACACAGCATAATCCAGGTC
AAGTACCAGTTTATGAACGAAGGCGCGGATGTCATACAGCACATAATAGACCACTTCCAAGTNTGATAGTTCCTCACTCT
TGGAAACATGGAGCANAGCTGCANATGGTTTTCCACTNTACTTACAGAAAATTAGAATCCAGATTTGCTTTGTTGTACNC
CAAAATNTCCCAGAGCTGTACATAAGAGGAATATCATAGAAAAAAACAAAAATNTTATAAGACTNTTTCANAGAATGGCC
ACTGTTGACCTGACAATGTTCATTTCCCCCANAGAACTTNTCATGTGGAATGTAACAACATTGCATGAGATATACGTCAG
GCACCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6057.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis