Browse Element(s) Details


Os.6060.1.S1_at

Description gb:AK071399.1
DB_XREF= gi:32981422
TID=Os.6060.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6060 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023095N13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023095N13, full insert sequence.
FL= gb:AK071399.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1928011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g19240OsAffx.12588.1.A1_at2/115+11150645..11154929retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g19250NANA5+11161154..11165792retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g19260NANA5+11166367..11166708retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g19270OsAffx.14759.1.S1_s_at11/115+11168717..11177270DNA mismatch repair protein MSH2, putative, expressed
LOC_Os05g19280Os.6060.1.S1_at11/115+11179693..11185627expressed protein
LOC_Os05g19290NANA5+11190301..11190540hypothetical protein
LOC_Os05g19300OsAffx.4378.1.S1_at11/115+11198961..11199368hypothetical protein
LOC_Os05g19300OsAffx.4378.1.S1_x_at11/115+11198961..11199368hypothetical protein
LOC_Os05g19310Os.27691.1.S1_x_at6/115+11201165..11204748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19310Os.27691.2.S1_x_at2/115+11201165..11204748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19320NANA5+11205052..11205642retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19330OsAffx.447.1.S1_at5/115+11208565..11213115retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19330OsAffx.22947.2.S1_x_at1/115+11208565..11213115retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19330Os.52609.1.S1_at1/115+11208565..11213115retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19330OsAffx.22947.1.S1_x_at1/115+11208565..11213115retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6060.1.S1_at--214--9131Chr05:11183315..11183339 (25 bp)
TGCTGTTGTGGTCACTCATGGAGAT
LOC_Os05g19280
Os.6060.1.S1_at--916--10851Chr05:11183392..11183416 (25 bp)
TTGGCATTCCTCTGCAGCAAATTTT
LOC_Os05g19280
Os.6060.1.S1_at--982--10691Chr05:11183544..11183568 (25 bp)
TTGCGTTACTGTATCCAACATGCTG
LOC_Os05g19280
Os.6060.1.S1_at--262--3531Chr05:11183562..11183586 (25 bp)
CATGCTGAGCAAAACTTCCCTATTA
LOC_Os05g19280
Os.6060.1.S1_at--26--6331Chr05:11185243..11185267 (25 bp)
GATGCATGGACGTGAAACTCTTAAG
LOC_Os05g19280
Os.6060.1.S1_at--662--6651Chr05:11185282..11185306 (25 bp)
GTTGATGGGCTTCGATGCAGTCATT
LOC_Os05g19280
Os.6060.1.S1_at--691--4991Chr05:11185298..11185322 (25 bp)
GCAGTCATTGAAACGGCCATTATTT
LOC_Os05g19280
Os.6060.1.S1_at--515--171Chr05:11185319..11185343 (25 bp)
ATTTTCCTATGCATCGTTATCCTTC
LOC_Os05g19280
Os.6060.1.S1_at--650--6791Chr05:11185334..11185358 (25 bp)
GTTATCCTTCTGCTTCGTGTATCAG
LOC_Os05g19280
Os.6060.1.S1_at--4--3091Chr05:11185377..11185401 (25 bp)
AATCAACTTCTGCATATGGTCTGTA
LOC_Os05g19280
Os.6060.1.S1_at--704--6071Chr05:11185426..11185450 (25 bp)
GAGTTATCACCTTCTCAGGAGTAGC
LOC_Os05g19280
Target Sequence 
TGCTGTTGTGGTCACTCATGGAGATAGACTAACAGCACAACAGCGCATGCATGTTCGAAATGAGTTAGTAGAGTTGCTTG
GCATTCCTCTGCAGCAAATTTTTGATATATCAGGATGTGATGACTACGAAACTGACTTGTCTGTATTGGATATGTTGCGT
TACTGTATCCAACATGCTGAGCAAAACTTCCCTATTAAAAAGAATTATCTTTTAGAGATGCATGGACGTGAAACTCTTAA
GCAGATAGCAGTGGGGTTGATGGGCTTCGATGCAGTCATTGAAACGGCCATTATTTTCCTATGCATCGTTATCCTTCTGC
TTCGTGTATCAGATAAATTGGTGCAATGGTAATCAACTTCTGCATATGGTCTGTATATATATATGTATAAAGGGGAGAAG
AGTTATCACCTTCTCAGGAGTAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6060.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis