Browse Element(s) Details


Os.6061.1.S1_at

Description gb:AK105549.1
DB_XREF= gi:32990758
TID=Os.6061.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.6061 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-128-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-128-A09, full insert sequence.
FL= gb:AK105549.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4054011/11Protein-L-isoaspartate O-methyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40470Os.50432.1.S1_at11/114+23829975..23832047Cytochrome P450 family protein, expressed
LOC_Os04g40490Os.56341.1.S1_at11/114+23835790..23839863Cellulase containing protein, expressed
LOC_Os04g40500Os.56341.1.S1_at1/114+23840950..23844414glycosyl hydrolase family 5 protein, putative, expressed
LOC_Os04g40520Os.14920.1.S1_s_at11/114+23846023..23853029Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed
LOC_Os04g40520OsAffx.4037.1.S1_x_at11/114+23846023..23853029Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed
LOC_Os04g40520Os.14920.3.S1_at11/114+23846023..23853029Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed
LOC_Os04g40520Os.14920.3.S1_x_at11/114+23846023..23853029Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed
LOC_Os04g40510NANA4+23846150..23849402Cellulase containing protein, expressed
LOC_Os04g40530Os.52433.1.S1_at11/114+23854240..23855631expressed protein
LOC_Os04g40540Os.6061.1.S1_at11/114+23856161..23858505Protein-L-isoaspartate O-methyltransferase, putative, expressed
LOC_Os04g40550OsAffx.26406.1.S1_s_at11/114+23858715..23860838expressed protein
LOC_Os04g40550OsAffx.26406.1.S1_at11/114+23858715..23860838expressed protein
LOC_Os04g40560NANA4+23867520..23868962expressed protein
LOC_Os04g40570Os.55136.1.S1_at11/114+23874886..23879151ABC transporter family protein, putative, expressed
LOC_Os04g40580Os.56033.1.S1_at11/114+23879216..23880536MBOAT family protein, expressed
LOC_Os04g40590OsAffx.4038.1.S1_x_at11/114+23882332..23883374membrane bound O-acyl transferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006464biological_processprotein modification
GO:0004719molecular_functionprotein-L-isoaspartate (D-aspartate) O-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6061.1.S1_at--416--151Chr04:23856716..23856740 (25 bp)
ATTAGTGTATTACTGAACGCATGCT
LOC_Os04g40540
Os.6061.1.S1_at--606--631Chr04:23856696..23856720 (25 bp)
ATGCTTTGCTTCCATCTTGGCGAAA
LOC_Os04g40540
Os.6061.1.S1_at--144--371Chr04:23856646..23856670 (25 bp)
ATAATATTTCTTGCCGTTCTCAACG
LOC_Os04g40540
Os.6061.1.S1_at--82--8951Chr04:23856596..23856620 (25 bp)
TGACGATGCACCATACGACGCCATT
LOC_Os04g40540
Os.6061.1.S1_at--876--1251Chr04:23856549..23856573 (25 bp)
AGATTCCTCAGCCTCTGGTCGATCA
LOC_Os04g40540
Os.6061.1.S1_at--47--831Chr04:23856505..23856529 (25 bp)
ATGGTCATACCCGTCGGCAGCTACT
LOC_Os04g40540
Os.6061.1.S1_at--1152--2051Chr04:23856483..23856507 (25 bp)
ACTTCCAGGAGCTGCAGGTGGTCGA
LOC_Os04g40540
Os.6061.1.S1_at--36--1951Chr04:23856447..23856471 (25 bp)
ACGGCTCGGTGACCGTCCAGAACGA
LOC_Os04g40540
Os.6061.1.S1_at--921--8991Chr04:23856378..23856402 (25 bp)
TGCAGGATTCCTAAGGTCGACGGCT
LOC_Os04g40540
Os.6061.1.S1_at--747--2111Chr04:23856335..23856359 (25 bp)
ACATGTAAATATCTCGACGCTCAGT
LOC_Os04g40540
Os.6061.1.S1_at--476--9351Chr04:23856322..23856346 (25 bp)
TCGACGCTCAGTCTACTTGGGTAGT
LOC_Os04g40540
Target Sequence 
ATTAGTGTATTACTGAACGCATGCTTTGCTTCCATCTTGGCGAAATCTAAAATGCAAAATCACTATGCGCATAATATTTC
TTGCCGTTCTCAACGCTGCAGATGGCAGGCTTGGTTGGCCTGACGATGCACCATACGACGCCATTCATGTGGGCGCCGCG
GCACCGNAGATTCCTCAGCCTCTGGTCGATCAGCTNAAGACCGGCGGCCGGATGGTCATACCCGTCGGCAGCTACTTCCA
GGAGCTGCAGGTGGTCGACAAGAACGCCGACGGCTCGGTGACCGTCCAGAACGACGCGTCCGTCCGCTACGTCCCTNTGA
CCANCCGCTCCGCTCAGCTGCAGGATTCCTAAGGTCGACGGCTNTAGGAGGTCATGAAAACACATGTAAATATCTCGACG
CTCAGTCTACTTGGGTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6061.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis