Browse Element(s) Details


Os.6063.1.S1_at

Description gb:AK070642.1
DB_XREF= gi:32980666
TID=Os.6063.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6063 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023060I01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023060I01, full insert sequence.
FL= gb:AK058595.1 gb:AK070642.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0315011/11Fizzy-related protein homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03110OsAffx.24948.1.S1_at11/113+1288723..1289365hypothetical protein
LOC_Os03g03120OsAffx.8512.1.S1_at9/113+1290133..1293472transposon protein, putative, Mutator sub-class
LOC_Os03g03130Os.25731.1.S1_at11/113+1296606..1299984Ubiquitin-conjugating enzyme E2 I, putative, expressed
LOC_Os03g03140Os.9314.1.S1_at11/113+1300894..1302829RNA recognition motif family protein, expressed
LOC_Os03g03150Os.6063.1.S1_at11/113+1305742..1309535Fizzy-related protein homolog, putative, expressed
LOC_Os03g03164Os.4164.2.S1_a_at11/113+1318397..1323586Homeobox protein HD1, putative, expressed
LOC_Os03g03180Os.7349.1.S1_at11/113+1324348..1327861Protein of unknown function, DUF614 containing protein, expressed
LOC_Os03g03190OsAffx.3121.1.S1_at11/113+1328923..1329342hypothetical protein
LOC_Os03g03200Os.17325.1.S1_at11/113+1333861..1336527expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6063.1.S1_at--917--211Chr03:1309023..1309047 (25 bp)
ATTTGTACCACTTGCATCACCAGTT
LOC_Os03g03150
Os.6063.1.S1_at--1149--7351Chr03:1309098..1309122 (25 bp)
GTGAAACTGGCTCGCAGACCTCGGA
LOC_Os03g03150
Os.6063.1.S1_at--260--1391Chr03:1309113..1309137 (25 bp)
AGACCTCGGAGTGGCTCATTTGCTG
LOC_Os03g03150
Os.6063.1.S1_at--140--31Chr03:1309209..1309233 (25 bp)
ATTGATAAGTTCACGGCCTCCTGTT
LOC_Os03g03150
Os.6063.1.S1_at--989--5951Chr03:1309353..1309377 (25 bp)
GAGAATTTCTGGTGCAATGTCCTAT
LOC_Os03g03150
Os.6063.1.S1_at--295--2991Chr03:1309368..1309392 (25 bp)
AATGTCCTATTCCAGCTGGTGTTGT
LOC_Os03g03150
Os.6063.1.S1_at--557--8611Chr03:1309384..1309408 (25 bp)
TGGTGTTGTTTCTTGCACTGTTGCA
LOC_Os03g03150
Os.6063.1.S1_at--266--6671Chr03:1309403..1309427 (25 bp)
GTTGCACTTCTCTGATAGTTCTGGT
LOC_Os03g03150
Os.6063.1.S1_at--1118--5251Chr03:1309440..1309464 (25 bp)
GAATCGAGCCAGTCTTGCTACTATG
LOC_Os03g03150
Os.6063.1.S1_at--852--10691Chr03:1309454..1309478 (25 bp)
TTGCTACTATGCGTCTATGCCAACG
LOC_Os03g03150
Os.6063.1.S1_at--775--8231Chr03:1309480..1309504 (25 bp)
GGCAACTTTGTACTGATCTATGTCA
LOC_Os03g03150
Target Sequence 
ATTTGTACCACTTGCATCACCAGTTCATGAACCATCAAACCTAGCCAAATTTTAGAGATAGTAGGATGCAGAATGGTGAA
ACTGGCTCGCAGACCTCGGAGTGGCTCATTTGCTGAATGCTGTATATATTTATTCATTGGCTTTGTAGGAGCGAAGATGG
CAAACACTGACCATCCGCAATGTACCATTGATAAGTTCACGGCCTCCTGTTTTTGTTTTTGCTGAGTCAACTTGGAGCTG
GAGCTCTTATGTATACCATGCTAGGGCTTAACAACATTGGCCAACTCATGATGCTCATTGCATCCAAGTTGGAATATGCT
AAGGAAGCTGGAGAATTTCTGGTGCAATGTCCTATTCCAGCTGGTGTTGTTTCTTGCACTGTTGCACTTCTCTGATAGTT
CTGGTAGACTAGGCTCAGAATCGAGCCAGTCTTGCTACTATGCGTCTATGCCAACGCGGCAACTTTGTACTGATCTATGT
CA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6063.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis