Browse Element(s) Details


Os.6072.1.S1_at

Description gb:AK067506.1
DB_XREF= gi:32977524
TID=Os.6072.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.6072 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013108D21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013108D21, full insert sequence.
FL= gb:AK067506.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5888011/11exocyst subunit EXO70 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58840Os.51017.1.S1_at8/114+34778015..34780007Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g58850Os.7901.1.S1_at11/114+34781950..34783076Harpin-induced protein 1 containing protein, expressed
LOC_Os04g58860Os.17892.1.S1_at9/114+34791894..34793355Harpin-induced protein 1 containing protein, expressed
LOC_Os04g58870Os.18157.1.S1_at11/114+34797521..34801722Exo70 exocyst complex subunit family protein, expressed
LOC_Os04g58880Os.6072.1.S1_at11/114+34802943..34809060exocyst subunit EXO70 family protein, putative, expressed
LOC_Os04g58890Os.48131.1.S1_s_at11/114+34812136..34813565expressed protein
LOC_Os04g58890OsAffx.14474.1.S1_at11/114+34812136..34813565expressed protein
LOC_Os04g58900Os.7083.1.S1_at11/114+34815800..34819282hydrolase, NUDIX family protein, expressed
LOC_Os04g58910Os.15783.1.S2_at11/114+34820857..34824722Protein kinase domain containing protein, expressed
LOC_Os04g58910Os.15783.1.S1_at11/114+34820857..34824722Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006904biological_processvesicle docking during exocytosis
GO:0000145cellular_componentexocyst
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6072.1.S1_at--1143--2331Chr04:34804305..34804329 (25 bp)
AAAGCAGTGTGGCTGGTCTGTTCCA
LOC_Os04g58880
Os.6072.1.S1_at--340--6691Chr04:34804233..34804257 (25 bp)
GTTGCCTGCATACAGATCTTTCCTA
LOC_Os04g58880
Os.6072.1.S1_at--395--10251Chr04:34803407..34803427 (21 bp)
TTTGGGCCTCTCATCGAGAACAGCA
LOC_Os04g58880
Os.6072.1.S1_at--747--8911Chr04:34803342..34803366 (25 bp)
TGAGCTACTGCTTGCCAATTTGTTT
LOC_Os04g58880
Os.6072.1.S1_at--815--5771Chr04:34803261..34803285 (25 bp)
GACGATGTGATGTCATTCTCTGTAA
LOC_Os04g58880
Os.6072.1.S1_at--336--3171Chr04:34803237..34803261 (25 bp)
AATTGGGACCCTGGTAGCATTGCTT
LOC_Os04g58880
Os.6072.1.S1_at--92--6871Chr04:34803210..34803234 (25 bp)
GTTTGTGTAGCGCTGCTGCTCAGAA
LOC_Os04g58880
Os.6072.1.S1_at--635--9651Chr04:34803191..34803215 (25 bp)
TCAGAACCGTTGCTATGTGCACCTT
LOC_Os04g58880
Os.6072.1.S1_at--1081--6471Chr04:34803139..34803163 (25 bp)
GATACTGTCCTAGTTGCCATTTATT
LOC_Os04g58880
Os.6072.1.S1_at--695--6931Chr04:34803099..34803123 (25 bp)
GTAGGTGCTAGGTTCGTTCTGATAT
LOC_Os04g58880
Os.6072.1.S1_at--1044--6072Chr01:4244131..4244472 (25 bp)
GAGTATAGTCGCAACTGTTTCCCAC
NONE
Target Sequence 
AAAGCAGTGTGGCTGGTCTGTTCCAGATACGGAGTTGCGTGAGTCACTAAGACTTGCAGTTGCTGAAATCCTGTTGCCTG
CATACAGATCTTTCCTAAAGCGCTTTGGGCCTCTCATCGAGAACAGCAAGGCACCNGGAAAATATGTCAAGCACACACCA
GAGCAAGTTGAGCTACTGCTTGCCAATTTGTTTGAAGGAAAACAAGAGCGTACTTGATTGGGGTATGTGGCTGNTTAATA
TACACCAGCGACGATGTGATGTCATTCTCTGTAAATTGGGACCCTGGTAGCATTGCTTTTGTTTGTGTAGCGCTGCTGCT
CAGAACCGTTGCTATGTGCACCTTTCCTTGCTGGGGTGCATGATTTGTATAGATACTGTCCTAGTTGCCATTTATTGTTT
TTGTTGATTTGGTAGGTGCTAGGTTCGTTCTGATATGTTGGAAACTNCGTGTTAGTGCATTCATTATTCAGTATCAGCAG
TGTGCAATAATTGTCCAATGTTAATGCAACCTCTAGTGCCTCCATTTTGCAGTTGCGGGAGTATAGTCGCAACTGTTTCC
CAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6072.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis