Browse Element(s) Details


Os.6092.1.S1_at

Description gb:AB120515.1
DB_XREF= gi:45544516
GEN=OsTPP1
TID=Os.6092.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.6092 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsTPP1 mRNA for trehalose-6-phosphate phosphatase, complete cds.
PROD=trehalose-6-phosphate phosphatase
FL= gb:AK059390.1 gb:AB120515.1 gb:AK103391.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4423011/11trehalose-phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44180Os.38751.1.A1_at5/112+26735523..26740760retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g44180OsAffx.27810.1.S1_x_at1/112+26735523..26740760retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g44180OsAffx.8338.1.S1_x_at1/112+26735523..26740760retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g44190OsAffx.22385.1.S1_x_at6/112+26741831..26744252retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g44190OsAffx.20329.1.S1_at3/112+26741831..26744252retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g44200OsAffx.24719.1.S1_at11/112+26749058..26751276thioesterase family protein
LOC_Os02g44210OsAffx.2955.1.S1_at11/112+26754041..26754565hypothetical protein
LOC_Os02g44220Os.5452.1.A1_s_at11/112+26756776..26760516Pex19 protein family protein, expressed
LOC_Os02g44230Os.6092.1.S1_at11/112+26761738..26765754trehalose-phosphatase family protein, expressed
LOC_Os02g44240OsAffx.12489.1.S1_at10/112+26766757..26767769hypothetical protein
LOC_Os02g44250Os.54704.1.S1_at10/112+26773435..26774394expressed protein
LOC_Os02g44260OsAffx.12490.1.S1_at10/112+26775727..26776764zinc-binding protein, putative
LOC_Os02g44260OsAffx.21876.1.S1_at1/112+26775727..26776764zinc-binding protein, putative
LOC_Os02g44270Os.52516.2.S1_x_at11/112+26778665..26782123expressed protein
LOC_Os02g44270Os.52516.1.S1_x_at9/112+26778665..26782123expressed protein
LOC_Os02g44280OsAffx.24720.1.S1_at11/112+26784122..26785006hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005992biological_processtrehalose biosynthesis
GO:0004805molecular_functiontrehalose-phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6092.1.S1_at--334--7851Chr02:26761990..26762014 (25 bp)
GGTTTTACTAATACTACTCCGGCAG
LOC_Os02g44230
Os.6092.1.S1_at--56--5591Chr02:26761966..26761990 (25 bp)
GAAATAACTGTAGTTTCCGAGGCGA
LOC_Os02g44230
Os.6092.1.S1_at--145--10651Chr02:26761952..26761976 (25 bp)
TTCCGAGGCGACAATTTTGAAGCAT
LOC_Os02g44230
Os.6092.1.S1_at--608--2691Chr02:26761933..26761957 (25 bp)
AAGCATTGGACGCTGTAGATAGATG
LOC_Os02g44230
Os.6092.1.S1_at--1145--2531Chr02:26761904..26761928 (25 bp)
AACTCTCTAGATATGTGGTTCCAAT
LOC_Os02g44230
Os.6092.1.S1_at--572--7491Chr02:26761890..26761914 (25 bp)
GTGGTTCCAATTCATTCTTATTGAT
LOC_Os02g44230
Os.6092.1.S1_at--279--8791Chr02:26761845..26761869 (25 bp)
TGTTCTCCACCGCTGAGAAAAATTA
LOC_Os02g44230
Os.6092.1.S1_at--609--1111Chr02:26761817..26761841 (25 bp)
AGTGATGGTTGATCCGGTCTCTTGC
LOC_Os02g44230
Os.6092.1.S1_at--546--9771Chr02:26761787..26761811 (25 bp)
TAAGTTGTAAGCAAGAAGGCCCTCT
LOC_Os02g44230
Os.6092.1.S1_at--182--5291Chr02:26761773..26761797 (25 bp)
GAAGGCCCTCTTCTTAGTATCCATG
LOC_Os02g44230
Os.6092.1.S1_at--1160--10031Chr02:26761759..26761783 (25 bp)
TAGTATCCATGCTGATGAACGAAAT
LOC_Os02g44230
Target Sequence 
GGTTTTACTAATACTACTCCGGCAGAAATAACTGTAGTTTCCGAGGCGACAATTTTGAAGCATTGGACGCTGTAGATAGA
TGTAATAACTCTCTAGATATGTGGTTCCAATTCATTCTTATTGATCGATGTTATTGTATTGTTCATGTTCTCCACCGCTG
AGAAAAATTAATCAGTGATGGTTGATCCGGTCTCTTGCCATTGTAAGTTGTAAGCAAGAAGGCCCTCTTCTTAGTATCCA
TGCTGATGAACGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6092.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis