Browse Element(s) Details


Os.6107.1.A1_at

Description gb:CB653342
DB_XREF= gi:29657067
DB_XREF=OSJNEc04E10.r
CLONE=OSJNEc04E10
TID=Os.6107.1
CNT=8
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.6107 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_201474.1 (A.thaliana) zinc finger protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1014011/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10100Os.53546.1.S1_at11/113+5091309..5093451Sugar transporter family protein, expressed
LOC_Os03g10100Os.53546.1.S1_s_at11/113+5091309..5093451Sugar transporter family protein, expressed
LOC_Os03g10100Os.26868.1.A1_at9/113+5091309..5093451Sugar transporter family protein, expressed
LOC_Os03g10110Os.6372.1.S1_at11/113+5095360..5098165Cupin family protein, expressed
LOC_Os03g10120Os.6749.1.S1_at9/113+5098396..5103730COP9 signalosome complex subunit 4, putative, expressed
LOC_Os03g10140Os.6107.1.A1_at11/113+5113432..5116623Zinc finger, C2H2 type family protein, expressed
LOC_Os03g10150Os.57173.1.S1_at11/113+5130083..5131155uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os03g10160OsAffx.3182.1.S1_at11/113+5134654..5134890hypothetical protein
LOC_Os03g10170NANA3+5136621..5137763hypothetical protein
LOC_Os03g10180Os.14877.1.S1_at10/113+5140681..5145886expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6107.1.A1_at--568--1111Chr03:5116022..5116046 (25 bp)
AGTGAGCCCGACAGGCGCGTCGACA
LOC_Os03g10140
Os.6107.1.A1_at--577--3091Chr03:5116288..5116312 (25 bp)
AATAGTGGAAGCAGCCAGGTTCAGT
LOC_Os03g10140
Os.6107.1.A1_at--637--991Chr03:5116304..5116328 (25 bp)
AGGTTCAGTTAGCAATTTAGCAGTA
LOC_Os03g10140
Os.6107.1.A1_at--884--6071Chr03:5116403..5116427 (25 bp)
GAGTTTCTTTTGTTGTTCACGGCCT
LOC_Os03g10140
Os.6107.1.A1_at--547--9571Chr03:5116429..5116453 (25 bp)
TCTTCTCCTGTGCTGTCTTTTGCAT
LOC_Os03g10140
Os.6107.1.A1_at--859--10271Chr03:5116447..5116471 (25 bp)
TTTGCATTTGTTTGTTCTCGTTCGC
LOC_Os03g10140
Os.6107.1.A1_at--684--10711Chr03:5116476..5116500 (25 bp)
TTGCTCTTGTCCTGTAGCTGCCACT
LOC_Os03g10140
Os.6107.1.A1_at--1011--3311Chr03:5116497..5116521 (25 bp)
CACTGCCTCTGCATTTAAACACAGC
LOC_Os03g10140
Os.6107.1.A1_at--845--2131Chr03:5116517..5116541 (25 bp)
ACAGCACTAGAGCAGTACATTTGGT
LOC_Os03g10140
Os.6107.1.A1_at--652--311Chr03:5116544..5116568 (25 bp)
ATACGGGAATTAAATCTGCTGGCTG
LOC_Os03g10140
Os.6107.1.A1_at--746--2271Chr03:5116555..5116579 (25 bp)
AAATCTGCTGGCTGGGACGAGCTTG
LOC_Os03g10140
Target Sequence 
AGTGAGCCCGACAGGCGCGTCGACAAGCAGGGGCTTCCCGACATTCATCCAACCCATCGGCGGCGCTGTCAGCTTGGCCG
GGAGTGCCACCGTCGCCGCGGAGACCTTCGGCGCCGCCCATGGCGGCCAGGCAAATCCGTGGGAGAGGAACCCGAGTAGC
TCACCAATCCTGTAATAGCACTAGCTAGCTAGCAACTGGTAGCAATTAGCACCAAGTAGCAAACCACTGTGAATTCGACA
CATGCAGCACGAAGTAAGACGGTGAAAATAGTGGAAGCAGCCAGGTTCAGTTAGCAATTTAGCAGTATCTTCCAACTTTT
GTTTGTTTCCTTTGACCAACGTCGTTCTTTTGTTTATTTAGCTTAGTACGAAGTTACAAGTGAGTTTCTTTTGTTGTTCA
CGGCCTCTCTTCTCCTGTGCTGTCTTTTGCATTTGTTTGTTCTCGTTCGCCTCCTTGCTCTTGTCCTGTAGCTGCCACTG
CCTCTGCATTTAAACACAGCACTAGAGCAGTACATTTGGTAGATACGGGAATTAAATCTGCTGGCTGGGACGAGCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6107.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis