Browse Element(s) Details


Os.6134.1.S1_at

Description gb:AU166460
DB_XREF= gi:12404859
DB_XREF=AU166460
CLONE=C12489
TID=Os.6134.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.6134 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g201507/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g19594OsAffx.20689.1.A1_x_at1/117+11603236..11610359retrotransposon protein, putative, unclassified
LOC_Os07g20100OsAffx.5382.1.S1_at11/117+11613954..11614678expressed protein
LOC_Os07g20110OsAffx.16339.1.S1_s_at11/117+11617440..11619279expressed protein
LOC_Os07g20120OsAffx.16340.1.S1_at11/117+11621339..11621578hypothetical protein
LOC_Os07g20130Os.53221.1.S1_at11/117+11625713..11626690MATH domain containing protein, expressed
LOC_Os07g20140OsAffx.16341.1.S1_at11/117+11628487..11628714hypothetical protein
LOC_Os07g20140OsAffx.16341.1.S1_x_at11/117+11628487..11628714hypothetical protein
LOC_Os07g20150OsAffx.16342.1.S1_at11/117+11630345..11634963expressed protein
LOC_Os07g20150Os.6134.1.S1_at7/117+11630345..11634963expressed protein
LOC_Os07g20160NANA7+11635585..11636241hypothetical protein
LOC_Os07g20170Os.46559.1.S1_at2/117+11641581..11644132Cofilin/tropomyosin-type actin-binding protein, expressed
LOC_Os07g20180OsAffx.28523.1.S1_at11/117+11645726..11646654hypothetical protein
LOC_Os07g20190NANA7+11652071..11653820retrotransposon, putative, centromere-specific
LOC_Os07g20200Os.31312.5.S1_x_at1/117+11655678..11658978retrotransposon protein, putative, unclassified
LOC_Os07g20210NANA7+11659606..11663784retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6134.1.S1_at--53--5811Chr07:11630406..11630430 (25 bp)
GACGCTGCTCATAAATTGTTTGTGG
LOC_Os07g20150
Os.6134.1.S1_at--664--4131Chr07:11630404..11630428 (25 bp)
CGCTGCTCATAAATTGTTTGTGGCT
LOC_Os07g20150
Os.6134.1.S1_at--913--10811Chr07:11630387..11630411 (25 bp)
TTGTGGCTGTGCTGTGGGTTTTAAT
LOC_Os07g20150
Os.6134.1.S1_at--394--8491Chr07:11630384..11630408 (25 bp)
TGGCTGTGCTGTGGGTTTTAATTTT
LOC_Os07g20150
Os.6134.1.S1_at--573--8631Chr07:11630373..11630397 (25 bp)
TGGGTTTTAATTTTTGCTTCAGCAA
LOC_Os07g20150
Os.6134.1.S1_at--1050--10271Chr07:11630361..11630385 (25 bp)
TTTGCTTCAGCAATACATATCTGTA
LOC_Os07g20150
Os.6134.1.S1_at--85--1491Chr07:11630353..11630377 (25 bp)
AGCAATACATATCTGTAACAGGTGT
LOC_Os07g20150
Os.6134.1.S1_at--151--8611Chr07:11630288..11630311 (24 bp)
TTAGGTCAGAACATTTTTTTGGAAT
NONE
Os.6134.1.S1_at--222--5531Chr07:11630250..11630274 (25 bp)
GAAAACCAGCAGTACACAGTCGGAA
NONE
Os.6134.1.S1_at--339--1531Chr07:11630243..11630267 (25 bp)
AGCAGTACACAGTCGGAAGCCCAGC
NONE
Os.6134.1.S1_at--705--3491NONE
CATGTTCATAACAGTCAATTTTTTA
NONE
Target Sequence 
GACGCTGCTCATAAATTGTTTGTGGCTGTGCTGTGGGTTTTAATTTTTGCTTCAGCAATACATATCTGTAACAGGTGTAC
NCCTAGTTTNTCAATGAGGAAGATGCGCGTGAATTNTTTTAGGTCAGAACATTTTTTTGGAATAACTCTNAGGGCTGAAA
ACCAGCAGTACACAGTCGGAAGCCCAGCNCCTCANAAGTGCNCCTCAGAAGNATCATTTTAACATGTTCATAACAGTCAA
TTTTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6134.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis