Browse Element(s) Details


Os.6139.2.S1_s_at

Description gb:AK109708.1
DB_XREF= gi:32994917
TID=Os.6139.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6139 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-145-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-145-G09, full insert sequence.
FL= gb:AK109708.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3458011/11trehalose-6-phosphate synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34550Os.49274.1.S1_at11/118+21567415..21569582Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g34560OsAffx.23616.2.S1_at11/118+21573616..21574363hypothetical protein
LOC_Os08g34570OsAffx.6021.1.S1_at10/118+21575758..21576557D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain containing protein
LOC_Os08g34580Os.6139.2.S1_s_at11/118+21589425..21593268trehalose-6-phosphate synthase, putative, expressed
LOC_Os08g34580Os.6139.1.S1_at11/118+21589425..21593268trehalose-6-phosphate synthase, putative, expressed
LOC_Os08g34590Os.45976.1.S1_at5/118+21601775..21604993transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g34590Os.45976.1.S1_x_at3/118+21601775..21604993transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g34600Os.46306.1.S1_x_at6/118+21607586..21610911transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g34610OsAffx.29509.1.S1_at8/118+21615253..21617175hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005992biological_processtrehalose biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0003825molecular_functionalpha,alpha-trehalose-phosphate synthase (UDP-forming) activity
GO:0004805molecular_functiontrehalose-phosphatase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6139.2.S1_s_at--1081--7811Chr08:21591361..21591385 (25 bp)
GGTAAGCACAAGATTTCCTCCCTAT
LOC_Os08g34580
Os.6139.2.S1_s_at--52--211Chr08:21591373..21591397 (25 bp)
ATTTCCTCCCTATTCTCTTGGCATG
LOC_Os08g34580
Os.6139.2.S1_s_at--548--9591Chr08:21591388..21591412 (25 bp)
TCTTGGCATGTTCCTTCGTTGGTTA
LOC_Os08g34580
Os.6139.2.S1_s_at--1003--9231Chr08:21591399..21591423 (25 bp)
TCCTTCGTTGGTTAGGTGAAACTGT
LOC_Os08g34580
Os.6139.2.S1_s_at--147--8971Chr08:21591415..21591439 (25 bp)
TGAAACTGTGGTTGCTGTCGGCCTA
LOC_Os08g34580
Os.6139.2.S1_s_at--1054--10711Chr08:21591426..21591450 (25 bp)
TTGCTGTCGGCCTAGGCATTGTTAG
LOC_Os08g34580
Os.6139.2.S1_s_at--1152--9772Chr08:21591463..21591487 (25 bp)
TAAGGTGCCTGGTATAGTGTATATT
LOC_Os08g34580
Os.6139.2.S1_s_at--375--1111Chr08:21591478..21591502 (25 bp)
AGTGTATATTCTCGAACTAGCAATT
LOC_Os08g34580
Os.6139.2.S1_s_at--1039--3711Chr08:21591520..21591544 (25 bp)
CTACCCTGAACTGGGTGGTGACAAT
LOC_Os08g34580
Os.6139.2.S1_s_at--946--4911Chr08:21591551..21591575 (25 bp)
GCTTGCATTATGATACTAAACAGGA
LOC_Os08g34580
Os.6139.2.S1_s_at--481--6111Chr08:21591599..21591623 (25 bp)
GAGGGCCTTTGTGATTCTATCTTTT
LOC_Os08g34580
Target Sequence 
GGTAAGCACAAGATTTCCTCCCTATTCTCTTGGCATGTTCCTTCGTTGGTTAGGTGAAACTGTGGTTGCTGTCGGCCTAG
GCATTGTTAGGTGACAAATGGATAAGGTGCCTGGTATAGTGTATATTCTCGAACTAGCAATTCTTCTGTAATCAGGTCAC
TACCCTGAACTGGGTGGTGACAATCTGCTGGCTTGCATTATGATACTAAACAGGAGTAGAGATGGTGGTATTTAAGTAGA
GGGCCTTTGTGATTCTATCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6139.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis