Browse Element(s) Details


Os.6141.1.S1_s_at

Description gb:AK098899.1
DB_XREF= gi:32984108
TID=Os.6141.1
CNT=37
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.6141 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002B06, full insert sequence.
FL= gb:AK098856.1 gb:AK065275.1 gb:AK098899.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0768011/11hydroxyproline-rich glycoprotein family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07630OsAffx.28329.1.S1_at10/117+3821023..3822292hypothetical protein
LOC_Os07g07640OsAffx.28330.1.S1_at7/117+3823496..3823900hypothetical protein
LOC_Os07g07654Os.17804.1.S1_at11/117+3828629..3838567expressed protein
LOC_Os07g07654Os.17804.2.S1_at11/117+3828629..3838567expressed protein
LOC_Os07g07654Os.17804.2.S1_x_at11/117+3828629..3838567expressed protein
LOC_Os07g07670OsAffx.16140.1.S1_at11/117+3841927..3842743expressed protein
LOC_Os07g07680OsAffx.16141.1.S1_at11/117+3844671..3848712hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os07g07680Os.6141.1.S1_s_at11/117+3844671..3848712hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os07g07690Os.49102.1.S1_x_at11/117+3858055..3866591PHD-finger family protein, expressed
LOC_Os07g07690Os.18324.1.S1_at10/117+3858055..3866591PHD-finger family protein, expressed
LOC_Os07g07690OsAffx.28331.1.S1_x_at10/117+3858055..3866591PHD-finger family protein, expressed
LOC_Os07g07690Os.49102.1.S2_x_at9/117+3858055..3866591PHD-finger family protein, expressed
LOC_Os07g07709Os.38506.1.S1_s_at10/117+3870436..388385640S ribosomal protein S18, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6141.1.S1_s_at--393--7111Chr07:3845879..3845903 (25 bp)
GTCATGGCCTCTACTGCAACCAAAG
LOC_Os07g07680
Os.6141.1.S1_s_at--808--7631Chr07:3845840..3845864 (25 bp)
GGGAGCCATATGTCTACCCAGCCAA
LOC_Os07g07680
Os.6141.1.S1_s_at--85--7911Chr07:3845815..3845839 (25 bp)
GGAGGTAACTAATTTTGCGCCAGGT
LOC_Os07g07680
Os.6141.1.S1_s_at--1034--9731Chr07:3845806..3845830 (25 bp)
TAATTTTGCGCCAGGTTTGCCGTAC
LOC_Os07g07680
Os.6141.1.S1_s_at--911--2211Chr07:3845717..3845741 (25 bp)
ACAATGGAATGGCACCTGCCTTCCA
LOC_Os07g07680
Os.6141.1.S1_s_at--143--771Chr07:3845626..3845650 (25 bp)
ATGTCGACGACAACTCAATCTGCAC
LOC_Os07g07680
Os.6141.1.S1_s_at--627--10851Chr07:3845561..3845585 (25 bp)
TTGGGTATCTCATCTTATCTGTGCT
LOC_Os07g07680
Os.6141.1.S1_s_at--374--5111Chr07:3845511..3845535 (25 bp)
GCACTCTACTCTGCATTGTGTTAGG
LOC_Os07g07680
Os.6141.1.S1_s_at--692--1011Chr07:3845489..3845513 (25 bp)
AGGTTATCTCATGCCTAGATCACTA
LOC_Os07g07680
Os.6141.1.S1_s_at--246--6331Chr07:3845472..3845496 (25 bp)
GATCACTACTTTGTACTACCACTAA
LOC_Os07g07680
Os.6141.1.S1_s_at--1044--10411Chr07:3845431..3845455 (25 bp)
TTATGTACGCTACCATTGAGACTGT
LOC_Os07g07680
Target Sequence 
GTCATGGCCTCTACTGCAACCAAAGCCCACCGGCGATCAGGGAGCCATATGTCTACCCAGCCAAGGAGGTAACTAATTTT
GCGCCAGGTTTGCCGTACTCTTCCCCTCCCATAAGCTATCCCCACGCCTATGGCGGGTACAACAATGGAATGGGAGCTTA
CAACAATGGAATGGCACCTGCCTTCCACCAGGCTTACTACCGGTAGGATCAGTCAGGAAAGTCGCTGATGAATGACATGA
CAAATAACTGATGATGTCGACGACAACTCAATCTGCACAATGGCTCATATTTTGTAGTGACTGACTACAAACGGTAGGTT
GGGTATCTCATCTTATCTGTGCTTACTAAGTTACCACTACTACTAGATGCACTCTACTCTGCATTGTGTTAGGTTATCTC
ATGCCTAGATCACTACTTTGTACTACCACTAAGAAACCTGGATGTAAATTATGTACGCTACCATTGAGACTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6141.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis