Browse Element(s) Details


Os.18324.1.S1_at

Description gb:AK107434.1
DB_XREF= gi:32992643
TID=Os.18324.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18324 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-128-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-128-A10, full insert sequence.
FL= gb:AK107434.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0769010/11PHD-finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07654Os.17804.1.S1_at11/117+3828629..3838567expressed protein
LOC_Os07g07654Os.17804.2.S1_at11/117+3828629..3838567expressed protein
LOC_Os07g07654Os.17804.2.S1_x_at11/117+3828629..3838567expressed protein
LOC_Os07g07670OsAffx.16140.1.S1_at11/117+3841927..3842743expressed protein
LOC_Os07g07680OsAffx.16141.1.S1_at11/117+3844671..3848712hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os07g07680Os.6141.1.S1_s_at11/117+3844671..3848712hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os07g07690Os.49102.1.S1_x_at11/117+3858055..3866591PHD-finger family protein, expressed
LOC_Os07g07690Os.18324.1.S1_at10/117+3858055..3866591PHD-finger family protein, expressed
LOC_Os07g07690OsAffx.28331.1.S1_x_at10/117+3858055..3866591PHD-finger family protein, expressed
LOC_Os07g07690Os.49102.1.S2_x_at9/117+3858055..3866591PHD-finger family protein, expressed
LOC_Os07g07709Os.38506.1.S1_s_at10/117+3870436..388385640S ribosomal protein S18, putative, expressed
LOC_Os07g07730OsAffx.5244.1.S1_at11/117+3885439..3885834hypothetical protein
LOC_Os07g07740OsAffx.16143.1.S1_at10/117+3889016..3890289hypothetical protein
LOC_Os07g07750OsAffx.16144.1.S1_at11/117+3891122..3892476expressed protein
LOC_Os07g07750OsAffx.31174.4.S1_x_at1/117+3891122..3892476expressed protein
LOC_Os07g07750OsAffx.31174.5.S1_x_at1/117+3891122..3892476expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18324.1.S1_at--768--8311Chr07:3865462..3865486 (25 bp)
GGCTAAGCCTAATCTAACTTGTGGG
LOC_Os07g07690
Os.18324.1.S1_at--631--691Chr07:3865536..3865560 (25 bp)
ATGACCTAGCTTCCAGAGAACCTGT
LOC_Os07g07690
Os.18324.1.S1_at--472--5971Chr07:3865551..3865575 (25 bp)
GAGAACCTGTTAATGCATGACTTTG
LOC_Os07g07690
Os.18324.1.S1_at--353--651Chr07:3865563..3865587 (25 bp)
ATGCATGACTTTGCATTTCCTGCTA
LOC_Os07g07690
Os.18324.1.S1_at--1038--5211Chr07:3866296..3866320 (25 bp)
GAATTTTGGTAGTCTGTCGATCATG
LOC_Os07g07690
Os.18324.1.S1_at--245--6931Chr07:3866340..3866364 (25 bp)
GTAGGCATAAGTAGTTCACACCGTA
LOC_Os07g07690
Os.18324.1.S1_at--1028--9691Chr07:3866355..3866379 (25 bp)
TCACACCGTAGGACCTCTTATACAA
LOC_Os07g07690
Os.18324.1.S1_at--102--10231Chr07:3866439..3866463 (25 bp)
TTTGGTGCACCTGAAATGTTGTCTG
LOC_Os07g07690
Os.18324.1.S1_at--889--3411Chr07:3866481..3866505 (25 bp)
CAGACTTGCAGGTAGTGCCTGTACA
LOC_Os07g07690
Os.18324.1.S1_at--818--4291Chr07:3866521..3866545 (25 bp)
CCTCATCTGTTTGACTGTTACTCTG
LOC_Os07g07690
Os.18324.1.S1_at--244--3131NONE
AATTTTCATTCGGTTTAGAGTTCTG
NONE
Target Sequence 
GGCTAAGCCTAATCTAACTTGTGGGGATGATCAACTTCATGGAGGGGATGGGACATACAAAAATAGCATGGAAGATGACC
TAGCTTCCAGAGAACCTGTTAATGCATGACTTTGCATTTCCTGCTACAAAATGTTTAAGTGAGCAGAGCAATGGGAGGGA
CGATCTAGTTTTCTGCAAGTAGCTGCCTCAGCTCGTTCTCCATGGCTACAACGAAGTGTTTAGAGTTGCATTTTGCAGCA
ATGAAATGCTGATGTTTCAGAATTTTGGTAGTCTGTCGATCATGGGGGCTTTTTGTTGGTTTAGTAGGCATAAGTAGTTC
ACACCGTAGGACCTCTTATACAAACCCCAAAAAGTGGGCCAAATTTTTGGTGTAAATACATGTGGGAAATTGCTGTTGGC
ATTTTGGTGCACCTGAAATGTTGTCTGAAGATTGTCGATGAAAACAGACTTGCAGGTAGTGCCTGTACAGATATAAAAAT
CCATCCTCATCTGTTTGACTGTTACTCTGAATTTTCATTCGGTTTAGAGTTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18324.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis