Browse Element(s) Details


OsAffx.28331.1.S1_x_at

Description tigr:9635.m00718
TID=OsAffx.28331.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0769010/11PHD-finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07654Os.17804.1.S1_at11/117+3828629..3838567expressed protein
LOC_Os07g07654Os.17804.2.S1_at11/117+3828629..3838567expressed protein
LOC_Os07g07654Os.17804.2.S1_x_at11/117+3828629..3838567expressed protein
LOC_Os07g07670OsAffx.16140.1.S1_at11/117+3841927..3842743expressed protein
LOC_Os07g07680OsAffx.16141.1.S1_at11/117+3844671..3848712hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os07g07680Os.6141.1.S1_s_at11/117+3844671..3848712hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os07g07690Os.49102.1.S1_x_at11/117+3858055..3866591PHD-finger family protein, expressed
LOC_Os07g07690Os.18324.1.S1_at10/117+3858055..3866591PHD-finger family protein, expressed
LOC_Os07g07690OsAffx.28331.1.S1_x_at10/117+3858055..3866591PHD-finger family protein, expressed
LOC_Os07g07690Os.49102.1.S2_x_at9/117+3858055..3866591PHD-finger family protein, expressed
LOC_Os07g07709Os.38506.1.S1_s_at10/117+3870436..388385640S ribosomal protein S18, putative, expressed
LOC_Os07g07730OsAffx.5244.1.S1_at11/117+3885439..3885834hypothetical protein
LOC_Os07g07740OsAffx.16143.1.S1_at10/117+3889016..3890289hypothetical protein
LOC_Os07g07750OsAffx.16144.1.S1_at11/117+3891122..3892476expressed protein
LOC_Os07g07750OsAffx.31174.4.S1_x_at1/117+3891122..3892476expressed protein
LOC_Os07g07750OsAffx.31174.5.S1_x_at1/117+3891122..3892476expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28331.1.S1_x_at--735--2991Chr07:3865019..3865043 (25 bp)
AATGTTGCTACTACTGAAGATCCCA
LOC_Os07g07690
OsAffx.28331.1.S1_x_at--104--6391Chr07:3865037..3865061 (25 bp)
GATCCCAGTGATTCTGTAGCTGACT
LOC_Os07g07690
OsAffx.28331.1.S1_x_at--179--2291Chr07:3865117..3865141 (25 bp)
AAATGCTTGCGCAACTATAGATCAA
LOC_Os07g07690
OsAffx.28331.1.S1_x_at--1105--3271Chr07:3865139..3865163 (25 bp)
CAAACTGCTGTTGACGATGTAGCTA
LOC_Os07g07690
OsAffx.28331.1.S1_x_at--800--8792Chr07:3865171..3865195 (25 bp)
TGTTGCTACCACTGAAAATGACACT
LOC_Os07g07690
OsAffx.28331.1.S1_x_at--1064--6551Chr07:3865196..3865220 (25 bp)
GATTCTACAGCTGAACTTGGAGTGT
LOC_Os07g07690
OsAffx.28331.1.S1_x_at--556--7411Chr07:3865269..3865293 (25 bp)
GTGATTCACCATTGAGAACTTCTAT
LOC_Os07g07690
OsAffx.28331.1.S1_x_at--782--2051NONE
ACTTCAGTGAAGCAGTGAGCAGAGC
NONE
OsAffx.28331.1.S1_x_at--1045--8011Chr07:3866190..3866214 (25 bp)
GGAGGGACGATCTAGTTTTCTGCAA
LOC_Os07g07690
OsAffx.28331.1.S1_x_at--635--1211Chr07:3866203..3866227 (25 bp)
AGTTTTCTGCAAGTAGCTGCCTCAG
LOC_Os07g07690
OsAffx.28331.1.S1_x_at--514--6711Chr07:3866231..3866255 (25 bp)
GTTCTCCATGGCTACAACGAAGTGT
LOC_Os07g07690
Target Sequence 
AATGTTGCTACTACTGAAGATCCCAGTGATTCTGTAGCTGACTGTGAAGTGCCAATAGTGAGGTCTATTCAGCAGAAGGA
TGAGGTTATCGCAGACAAAAATGCTTGCGCAACTATAGATCAAACTGCTGTTGACGATGTAGCTAATAATTTTGTTGCTA
CCACTGAAAATGACACTGATTCTACAGCTGAACTTGGAGTGTCAATGGAGAGATGTATCCAGCAAAAGGTTGAGGTTATC
AAAGACAAAAGTGATTCACCATTGAGAACTTCTATAAGCAAAGTTATGTTGGAGAAATCGGATCAAATGAAGTCTACTGA
AAGTGATAGTGTTAAAATGAAGGACATGGCGATTGAGGTGAAAGTCACAGTTGAGAACTTCAGTGAAGCAGTGAGCAGAG
CAATGGGAGGGACGATCTAGTTTTCTGCAAGTAGCTGCCTCAGCTCGTTCTCCATGGCTACAACGAAGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28331.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis