Browse Element(s) Details


OsAffx.5244.1.S1_at

Description tigr:9635.m00722
TID=OsAffx.5244.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0773011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07690Os.49102.1.S1_x_at11/117+3858055..3866591PHD-finger family protein, expressed
LOC_Os07g07690Os.18324.1.S1_at10/117+3858055..3866591PHD-finger family protein, expressed
LOC_Os07g07690OsAffx.28331.1.S1_x_at10/117+3858055..3866591PHD-finger family protein, expressed
LOC_Os07g07690Os.49102.1.S2_x_at9/117+3858055..3866591PHD-finger family protein, expressed
LOC_Os07g07709Os.38506.1.S1_s_at10/117+3870436..388385640S ribosomal protein S18, putative, expressed
LOC_Os07g07730OsAffx.5244.1.S1_at11/117+3885439..3885834hypothetical protein
LOC_Os07g07740OsAffx.16143.1.S1_at10/117+3889016..3890289hypothetical protein
LOC_Os07g07750OsAffx.16144.1.S1_at11/117+3891122..3892476expressed protein
LOC_Os07g07750OsAffx.31174.4.S1_x_at1/117+3891122..3892476expressed protein
LOC_Os07g07750OsAffx.31174.5.S1_x_at1/117+3891122..3892476expressed protein
LOC_Os07g07760NANA7+3893590..3893979expressed protein
LOC_Os07g07770Os.38506.1.S1_s_at1/117+3894981..389812640S ribosomal protein S18, putative
LOC_Os07g07780OsAffx.28334.1.S1_at10/117+3901809..3907579hypothetical protein
LOC_Os07g07780Os.56346.1.S1_at3/117+3901809..3907579hypothetical protein
LOC_Os07g07790OsAffx.28335.1.S1_at11/117+3908961..3909606Protease inhibitor/seed storage/LTP family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5244.1.S1_at--19--8491Chr07:3885779..3885803 (25 bp)
TGGCATTTTCTACGCACGACGCCGA
LOC_Os07g07730
OsAffx.5244.1.S1_at--514--4111Chr07:3885691..3885781 (25 bp)
CGAACCACTCGGTCTGATTGCATGG
LOC_Os07g07730
OsAffx.5244.1.S1_at--1054--7151Chr07:3885680..3885704 (25 bp)
GTCTGATTGCATGGATGGTCTTTGA
LOC_Os07g07730
OsAffx.5244.1.S1_at--303--7152Chr07:3885663..3885687 (25 bp)
GTCTTTGAAGTGAACCGAGCCGTCA
LOC_Os07g07730
OsAffx.5244.1.S1_at--514--1391Chr07:3885646..3885670 (25 bp)
AGCCGTCAAGGTTCCTAGTTATGGT
LOC_Os07g07730
OsAffx.5244.1.S1_at--1098--7774Chr07:29058935..29058957 (22 bp)
GGTCCGGTCCGTTTTTTGCACTATG
NONE
OsAffx.5244.1.S1_at--674--10351Chr07:3885593..3885617 (25 bp)
TTTTTGCACTATGCGCCAAAGCGCG
LOC_Os07g07730
OsAffx.5244.1.S1_at--547--4551Chr07:3885581..3885605 (25 bp)
GCGCCAAAGCGCGTACTGGGACAAC
LOC_Os07g07730
OsAffx.5244.1.S1_at--558--5131Chr07:3885549..3885573 (25 bp)
GCAAAGCCGGTGATGGCTTCGCATC
LOC_Os07g07730
OsAffx.5244.1.S1_at--943--4911Chr07:3885534..3885558 (25 bp)
GCTTCGCATCCCTATGCTAAGATGA
LOC_Os07g07730
OsAffx.5244.1.S1_at--218--2772Chr07:3885508..3885532 (25 bp)
AAGACGATGGTACATTTGTGCACAA
LOC_Os07g07730
Target Sequence 
TGGCATTTTCTACGCACGACGCCGAACCACTCGGTCTGATTGCATGGATGGTCTTTGAAGTGAACCGAGCCGTCAAGGTT
CCTAGTTATGGTTTTTTCCGGTTTAACCGGTCCGGTCCGTTTTTTGCACTATGCGCCAAAGCGCGTACTGGGACAACGAG
CACGGCAAAGCCGGTGATGGCTTCGCATCCCTATGCTAAGATGATAAGACGATGGTACATTTGTGCACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5244.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis