Browse Element(s) Details


OsAffx.28335.1.S1_at

Description tigr:9635.m00728
TID=OsAffx.28335.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protease inhibitorseed storageLTP family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0779011/11Protease inhibitor/seed storage/LTP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07730OsAffx.5244.1.S1_at11/117+3885439..3885834hypothetical protein
LOC_Os07g07740OsAffx.16143.1.S1_at10/117+3889016..3890289hypothetical protein
LOC_Os07g07750OsAffx.16144.1.S1_at11/117+3891122..3892476expressed protein
LOC_Os07g07750OsAffx.31174.4.S1_x_at1/117+3891122..3892476expressed protein
LOC_Os07g07750OsAffx.31174.5.S1_x_at1/117+3891122..3892476expressed protein
LOC_Os07g07760NANA7+3893590..3893979expressed protein
LOC_Os07g07770Os.38506.1.S1_s_at1/117+3894981..389812640S ribosomal protein S18, putative
LOC_Os07g07780OsAffx.28334.1.S1_at10/117+3901809..3907579hypothetical protein
LOC_Os07g07780Os.56346.1.S1_at3/117+3901809..3907579hypothetical protein
LOC_Os07g07790OsAffx.28335.1.S1_at11/117+3908961..3909606Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g07800NANA7+3912066..3912922hypothetical protein
LOC_Os07g07820NANA7+3913221..3919134expressed protein
LOC_Os07g07824NANA7+3920472..3921462NA
LOC_Os07g07830NANA7+3929837..3932091retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g07840NANA7+3932362..3935160retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0016020cellular_componentmembrane
GO:0031225cellular_componentanchored to membrane
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28335.1.S1_at--159--5071Chr07:3909070..3909094 (25 bp)
GCAGCTGCATGACGGAGATAATCAG
LOC_Os07g07790
OsAffx.28335.1.S1_at--640--1931Chr07:3909081..3909105 (25 bp)
ACGGAGATAATCAGCCTGGCGTCGT
LOC_Os07g07790
OsAffx.28335.1.S1_at--586--1271Chr07:3909085..3909109 (25 bp)
AGATAATCAGCCTGGCGTCGTGCCT
LOC_Os07g07790
OsAffx.28335.1.S1_at--1084--3071Chr07:3909089..3909113 (25 bp)
AATCAGCCTGGCGTCGTGCCTGGGC
LOC_Os07g07790
OsAffx.28335.1.S1_at--220--4011Chr07:3909103..3909127 (25 bp)
CGTGCCTGGGCTACATGTCCGGGAA
LOC_Os07g07790
OsAffx.28335.1.S1_at--115--8651Chr07:3909109..3909133 (25 bp)
TGGGCTACATGTCCGGGAACTCGTC
LOC_Os07g07790
OsAffx.28335.1.S1_at--617--7471Chr07:3909171..3909195 (25 bp)
GTGGTGACGTCCAAACCGGCGTGCC
LOC_Os07g07790
OsAffx.28335.1.S1_at--782--7371Chr07:3909174..3909198 (25 bp)
GTGACGTCCAAACCGGCGTGCCTCT
LOC_Os07g07790
OsAffx.28335.1.S1_at--375--1131Chr07:3909304..3909407 (25 bp)
AGTGCAGCACTGTCGGCGTCCCGAT
LOC_Os07g07790
OsAffx.28335.1.S1_at--1161--7271Chr07:3909448..3909472 (25 bp)
GTGCCAAGCGAGACTCCGGCGGGAA
LOC_Os07g07790
OsAffx.28335.1.S1_at--747--4871Chr07:3909526..3909550 (25 bp)
GCTTCCGGCGGGAGCGTCGGCAAGG
LOC_Os07g07790
Target Sequence 
GCAGCTGCATGACGGAGATAATCAGCCTGGCGTCGTGCCTGGGCTACATGTCCGGGAACTCGTCGGCGCCGAAGCCGTCG
TGCTGCACGGCGCTGTCGAGCGTGGTGACGTCCAAACCGGCGTGCCTCTGCGCCGTGCTCGGCGGCGGCGCCTCCTCGCT
CGGCGTCACCATCAACAACACCCGCGCCCTCGAGCTCCCCGCCGCCTGCAACGTCAAGACCCCTCCGGCGAGCCAGTGCA
GCACTGTCGGCGTCCCGATGCCATCTCCGGCGACGCCGGCGACACCGGCGGCACCGGCGGTGCCAAGCGAGACTCCGGCG
GGAACCGGCGGGTCGAAGGCGACTCCGACGACGGCGACCACCACCACCGGGCAGAGTGCTTCCGGCGGGAGCGTCGGCAA
GG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28335.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis