Browse Element(s) Details


OsAffx.28334.1.S1_at

Description tigr:9635.m00727
TID=OsAffx.28334.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0778010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07709Os.38506.1.S1_s_at10/117+3870436..388385640S ribosomal protein S18, putative, expressed
LOC_Os07g07730OsAffx.5244.1.S1_at11/117+3885439..3885834hypothetical protein
LOC_Os07g07740OsAffx.16143.1.S1_at10/117+3889016..3890289hypothetical protein
LOC_Os07g07750OsAffx.16144.1.S1_at11/117+3891122..3892476expressed protein
LOC_Os07g07750OsAffx.31174.4.S1_x_at1/117+3891122..3892476expressed protein
LOC_Os07g07750OsAffx.31174.5.S1_x_at1/117+3891122..3892476expressed protein
LOC_Os07g07760NANA7+3893590..3893979expressed protein
LOC_Os07g07770Os.38506.1.S1_s_at1/117+3894981..389812640S ribosomal protein S18, putative
LOC_Os07g07780OsAffx.28334.1.S1_at10/117+3901809..3907579hypothetical protein
LOC_Os07g07780Os.56346.1.S1_at3/117+3901809..3907579hypothetical protein
LOC_Os07g07790OsAffx.28335.1.S1_at11/117+3908961..3909606Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g07800NANA7+3912066..3912922hypothetical protein
LOC_Os07g07820NANA7+3913221..3919134expressed protein
LOC_Os07g07824NANA7+3920472..3921462NA
LOC_Os07g07830NANA7+3929837..3932091retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g07840NANA7+3932362..3935160retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28334.1.S1_at--175--551Chr07:3906755..3906775 (21 bp)
ATCCGTTCCACAATCGACAAGTTGC
LOC_Os07g07780
OsAffx.28334.1.S1_at--137--7071Chr07:3906627..3906651 (25 bp)
GTAATGCAGTGTTCTTGTCTCAAAT
LOC_Os07g07780
OsAffx.28334.1.S1_at--439--10531Chr07:3906594..3906618 (25 bp)
TTCATGCTTCATGCTGGACTGTCAT
LOC_Os07g07780
OsAffx.28334.1.S1_at--453--5191Chr07:3905753..3905777 (25 bp)
GCAATCGCTCCAGCTGCTAGGAGAA
LOC_Os07g07780
OsAffx.28334.1.S1_at--259--2311Chr07:3905711..3905735 (25 bp)
AAAGGCGCCAAGAGTGTCCTGCAGA
LOC_Os07g07780
OsAffx.28334.1.S1_at--599--491Chr07:3905684..3905708 (25 bp)
ATCGGCCAGCCGTTGGTGATGACCT
LOC_Os07g07780
OsAffx.28334.1.S1_at--620--8971Chr07:3905621..3905641 (21 bp)
TGAACAGAAAAACCTCCCGGGCGAT
LOC_Os07g07780
OsAffx.28334.1.S1_at--227--6571Chr07:3904030..3904054 (25 bp)
GATTCACAGTGTGCCGACTTGGCAT
LOC_Os07g07780
OsAffx.28334.1.S1_at--118--411Chr07:3904007..3904031 (25 bp)
ATCAGTTTTTGGTAGGCGCCGAGGC
LOC_Os07g07780
OsAffx.28334.1.S1_at--1115--71Chr07:3902533..3902557 (25 bp)
ATTGCCACTACTAGATTGCTTGCTA
LOC_Os07g07780
OsAffx.28334.1.S1_at--174--7251NONE
GTCCTCTGAGATCATTGCCAGTACT
NONE
Target Sequence 
ATCCGTTCCACAATCGACAAGTTGCTAGGATGTAATGCAGTGTTCTTGTCTCAAATCTCAACTTTTCATGCTTCATGCTG
GACTGTCATGAAGGCGCAGAGGAAATGCAATGTAGGATGGTTTGACATGGTGGTGGCTGCAATCGCTCCAGCTGCTAGGA
GAATGATCACACAGACAGAGAAAGGCGCCAAGAGTGTCCTGCAGACCATCGGCCAGCCGTTGGTGATGACCTTGGTGAGT
GCCGCGAGTGCGAGGAAGATGCCGATTGCTACGGTGAACAGAAAAACCTCCCGGGCGATTCACAGTGTGCCGACTTGGCA
TCAGTTTTTGGTAGGCGCCGAGGCCCGGCTTGCACGGGCAATGGCCCAGGCTCTACCAGCTGCACGCAGCAACTCACCGA
TCATTGCCACTACTAGATTGCTTGCTATTGCTGTAGCAGCAGCCAGCCAGTGCAGGTGCTGTGATGGCGGTTTCCTAGGT
CCGGCGCCGTCCTCTGAGATCATTGCCAGTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28334.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis