Browse Element(s) Details


Os.56346.1.S1_at

Description gb:AK109899.1
DB_XREF= gi:32995108
TID=Os.56346.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56346 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-149-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-149-F06, full insert sequence.
FL= gb:AK109899.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g077803/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07709Os.38506.1.S1_s_at10/117+3870436..388385640S ribosomal protein S18, putative, expressed
LOC_Os07g07730OsAffx.5244.1.S1_at11/117+3885439..3885834hypothetical protein
LOC_Os07g07740OsAffx.16143.1.S1_at10/117+3889016..3890289hypothetical protein
LOC_Os07g07750OsAffx.16144.1.S1_at11/117+3891122..3892476expressed protein
LOC_Os07g07750OsAffx.31174.4.S1_x_at1/117+3891122..3892476expressed protein
LOC_Os07g07750OsAffx.31174.5.S1_x_at1/117+3891122..3892476expressed protein
LOC_Os07g07760NANA7+3893590..3893979expressed protein
LOC_Os07g07770Os.38506.1.S1_s_at1/117+3894981..389812640S ribosomal protein S18, putative
LOC_Os07g07780OsAffx.28334.1.S1_at10/117+3901809..3907579hypothetical protein
LOC_Os07g07780Os.56346.1.S1_at3/117+3901809..3907579hypothetical protein
LOC_Os07g07790OsAffx.28335.1.S1_at11/117+3908961..3909606Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g07800NANA7+3912066..3912922hypothetical protein
LOC_Os07g07820NANA7+3913221..3919134expressed protein
LOC_Os07g07824NANA7+3920472..3921462NA
LOC_Os07g07830NANA7+3929837..3932091retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g07840NANA7+3932362..3935160retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56346.1.S1_at--1065--971Chr02:6227951..6227975 (25 bp)
AGGATGGTACTGCTTTTCTGACCTT
NONE
Os.56346.1.S1_at--20--5851Chr02:6227970..6227994 (25 bp)
GACCTTGCGTGTGCCTGTAACTGTA
NONE
Os.56346.1.S1_at--326--7431Chr02:6228008..6228032 (25 bp)
GTGTTTCCTTTGAATGCGCGTGGCA
NONE
Os.56346.1.S1_at--1152--2272Chr02:6228042..6228066 (25 bp)
AAATGCCTCTGTGGGAGTAGCACGC
NONE
Os.56346.1.S1_at--784--6951Chr02:6228058..6228082 (25 bp)
GTAGCACGCAGTACTTACGCACGCA
NONE
Os.56346.1.S1_at--598--791Chr02:6228088..6228112 (25 bp)
ATGTGTGCCCATTTTGCTCTATGCA
NONE
Os.56346.1.S1_at--503--6631Chr02:6228137..6228161 (25 bp)
GTTGTGCTGCTGATTAACCACTGCA
NONE
Os.56346.1.S1_at--261--231Chr02:6228189..6228213 (25 bp)
ATATTTTGGTGTGTTCCAGCCTGCT
NONE
Os.56346.1.S1_at--39--7192Chr02:6228214..6228238 (25 bp)
GTCTGTTGTTTGCTGACCATTGCAT
NONE
Os.56346.1.S1_at--568--9052Chr02:6228234..6228258 (25 bp)
TGCATTTGCTGCTGACCCAAACAAG
NONE
Os.56346.1.S1_at--1108--5491Chr02:6228336..6228360 (25 bp)
GAACAGCTTTGCAGTCTTTGCACTA
NONE
Target Sequence 
AGGATGGTACTGCTTTTCTGACCTTGCGTGTGCCTGTAACTGTAATCTCAATTTCCTGTGTTTCCTTTGAATGCGCGTGG
CATGTTTGTGGAAATGCCTCTGTGGGAGTAGCACGCAGTACTTACGCACGCACGCACATGTGTGCCCATTTTGCTCTATG
CATATCCTTATGCCTGCATGTTGTGAGTTGTGCTGCTGATTAACCACTGCAGAATTATTGGTTTTTTAAGTTAGAACAAT
ATTTTGGTGTGTTCCAGCCTGCTGTCTGTTGTTTGCTGACCATTGCATTTGCTGCTGACCCAAACAAGTTTTAGGACCAA
GAGGTTGATTCTGTGTGGACTTAATTATGGTAATGAAAGTAGCTGTACATAATAGTTGCAATGCAGAACAGCTTTGCAGT
CTTTGCACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56346.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis