Browse Element(s) Details


Os.38506.1.S1_s_at

Description gb:BM418791
DB_XREF= gi:18385592
DB_XREF=R004G10
CLONE=R004G10
TID=Os.38506.1
CNT=24
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.38506 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_173692.1 (A.thaliana) putative 40S ribosomal protein S18 (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0770910/1140S ribosomal protein S18, putative, expressed
LOC_Os07g077701/1140S ribosomal protein S18, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07680OsAffx.16141.1.S1_at11/117+3844671..3848712hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os07g07680Os.6141.1.S1_s_at11/117+3844671..3848712hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os07g07690Os.49102.1.S1_x_at11/117+3858055..3866591PHD-finger family protein, expressed
LOC_Os07g07690Os.18324.1.S1_at10/117+3858055..3866591PHD-finger family protein, expressed
LOC_Os07g07690OsAffx.28331.1.S1_x_at10/117+3858055..3866591PHD-finger family protein, expressed
LOC_Os07g07690Os.49102.1.S2_x_at9/117+3858055..3866591PHD-finger family protein, expressed
LOC_Os07g07709Os.38506.1.S1_s_at10/117+3870436..388385640S ribosomal protein S18, putative, expressed
LOC_Os07g07730OsAffx.5244.1.S1_at11/117+3885439..3885834hypothetical protein
LOC_Os07g07740OsAffx.16143.1.S1_at10/117+3889016..3890289hypothetical protein
LOC_Os07g07750OsAffx.16144.1.S1_at11/117+3891122..3892476expressed protein
LOC_Os07g07750OsAffx.31174.4.S1_x_at1/117+3891122..3892476expressed protein
LOC_Os07g07750OsAffx.31174.5.S1_x_at1/117+3891122..3892476expressed protein
LOC_Os07g07760NANA7+3893590..3893979expressed protein
LOC_Os07g07770Os.38506.1.S1_s_at1/117+3894981..389812640S ribosomal protein S18, putative
LOC_Os07g07780OsAffx.28334.1.S1_at10/117+3901809..3907579hypothetical protein
LOC_Os07g07780Os.56346.1.S1_at3/117+3901809..3907579hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0006413biological_processtranslational initiation
GO:0005840cellular_componentribosome
GO:0015935cellular_componentsmall ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38506.1.S1_s_at--94--2471NONE
AACAAGCGGGCTGGTGAACTCACTC
NONE
Os.38506.1.S1_s_at--409--1552Chr07:3883037..3883061 (25 bp)
AGCTTGAGCGCCTCATGACTGTGGT
LOC_Os07g07709
Os.38506.1.S1_s_at--121--9632Chr07:3883049..3883073 (25 bp)
TCATGACTGTGGTGGCAAACCCTCG
LOC_Os07g07709
Os.38506.1.S1_s_at--561--7532Chr07:3883060..3883084 (25 bp)
GTGGCAAACCCTCGCCAGTTCAAGG
LOC_Os07g07709
Os.38506.1.S1_s_at--1013--9712Chr07:3883079..3883103 (25 bp)
TCAAGGTCCCTGACTGGTTTCTGAA
LOC_Os07g07709
Os.38506.1.S1_s_at--190--7252Chr07:3883084..3883108 (25 bp)
GTCCCTGACTGGTTTCTGAACAGGA
LOC_Os07g07709
Os.38506.1.S1_s_at--1060--992Chr07:3883139..3883163 (25 bp)
AGGTTGTTTCTAACGCCCTGGACAT
LOC_Os07g07709
Os.38506.1.S1_s_at--485--9532Chr07:3883147..3883171 (25 bp)
TCTAACGCCCTGGACATGAAGCTCA
LOC_Os07g07709
Os.38506.1.S1_s_at--41--9673Chr07:3898066..3898090 (25 bp)
TCAGCACACCAAGACTACTGGCAGG
LOC_Os07g07770
Os.38506.1.S1_s_at--411--7073Chr07:3898192..3898216 (25 bp)
GTCTTGATAGGCAGTTTTGTTGGAT
NONE
Os.38506.1.S1_s_at--117--4172Chr07:3883901..3883925 (25 bp)
CCGCAAATTCTGAAGCCTAATTTTT
NONE
Target Sequence 
AACAAGCGGGCTGGTGAACTCACTCCTGAGGAGCTTGAGCGCCTCATGACTGTGGTGGCAAACCCTCGCCAGTTCAAGGT
CCCTGACTGGTTTCTGAACAGGAAGAAGGACTACAAGGATGGGAGGTTCTCCCAGGTTGTTTCTAACGCCCTGGACATGA
AGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGGAACCACCGTGGTCTNCGTCACTACTGGGGTCTCCGTGTCCGN
GGTCAGCACACCAAGACTACTGGCAGGAGGGGAAAGACTGTCGGTGTCTCCAAGAAGAGATAAATTCCATGCCCATCNGC
NCAGCAAATNCNTTTTGCTTNTCTTATGAGCGTTTCAATGATGTCAGTCTTGATAGGCAGTTTTGTTGGATGATGCTTTT
GTCTAAGAAGATAGATCGTGCGTTGNAGGANTCTCAAAACTTTTATATATTGTAACTTGNTTGTTTGGTACCGCAAATTC
TGAAGCCTAATTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38506.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis