Browse Element(s) Details


Os.49102.1.S2_x_at

Description gb:CB624178
DB_XREF= gi:29619166
DB_XREF=OSIIEa12H16.f
CLONE=OSIIEa12H16
TID=Os.49102.1
CNT=3
FEA=FLmRNA
TIER=ConsEnd
STK=0
UG=Os.49102 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-173-G03, full insert sequence
FL= gb:AK110935.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g076909/11PHD-finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07654Os.17804.1.S1_at11/117+3828629..3838567expressed protein
LOC_Os07g07654Os.17804.2.S1_at11/117+3828629..3838567expressed protein
LOC_Os07g07654Os.17804.2.S1_x_at11/117+3828629..3838567expressed protein
LOC_Os07g07670OsAffx.16140.1.S1_at11/117+3841927..3842743expressed protein
LOC_Os07g07680OsAffx.16141.1.S1_at11/117+3844671..3848712hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os07g07680Os.6141.1.S1_s_at11/117+3844671..3848712hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os07g07690Os.49102.1.S1_x_at11/117+3858055..3866591PHD-finger family protein, expressed
LOC_Os07g07690Os.18324.1.S1_at10/117+3858055..3866591PHD-finger family protein, expressed
LOC_Os07g07690OsAffx.28331.1.S1_x_at10/117+3858055..3866591PHD-finger family protein, expressed
LOC_Os07g07690Os.49102.1.S2_x_at9/117+3858055..3866591PHD-finger family protein, expressed
LOC_Os07g07709Os.38506.1.S1_s_at10/117+3870436..388385640S ribosomal protein S18, putative, expressed
LOC_Os07g07730OsAffx.5244.1.S1_at11/117+3885439..3885834hypothetical protein
LOC_Os07g07740OsAffx.16143.1.S1_at10/117+3889016..3890289hypothetical protein
LOC_Os07g07750OsAffx.16144.1.S1_at11/117+3891122..3892476expressed protein
LOC_Os07g07750OsAffx.31174.4.S1_x_at1/117+3891122..3892476expressed protein
LOC_Os07g07750OsAffx.31174.5.S1_x_at1/117+3891122..3892476expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49102.1.S2_x_at--45--8171Chr07:3859926..3859950 (25 bp)
GGAAAATTGATCTAAGGCGCAGGAA
LOC_Os07g07690
Os.49102.1.S2_x_at--72--9491Chr07:3859982..3860006 (25 bp)
TCTCCACAAGGAAATGGCTATTGGT
LOC_Os07g07690
Os.49102.1.S2_x_at--1020--4851Chr07:3859998..3860022 (25 bp)
GCTATTGGTCAATCACTAAGGCTTA
LOC_Os07g07690
Os.49102.1.S2_x_at--763--2011Chr07:3860012..3860036 (25 bp)
ACTAAGGCTTATGCTGTGTTCCAAG
LOC_Os07g07690
Os.49102.1.S2_x_at--125--4731Chr07:3860024..3860048 (25 bp)
GCTGTGTTCCAAGAGCAGTCTAAAA
LOC_Os07g07690
Os.49102.1.S2_x_at--1140--4571NONE
GCAGTCTAAAAGTGGGAAGCGTACA
NONE
Os.49102.1.S2_x_at--356--4611NONE
GCGTACAGGTAAATCATCTAAGCAT
NONE
Os.49102.1.S2_x_at--387--2351Chr07:3860081..3860105 (25 bp)
AAAGCAGGTGTTGCAGATGCTGCCT
LOC_Os07g07690
Os.49102.1.S2_x_at--808--1291Chr07:3860095..3860119 (25 bp)
AGATGCTGCCTGTAATGCCATATCA
LOC_Os07g07690
Os.49102.1.S2_x_at--598--931Chr07:3860216..3860240 (25 bp)
AGGAACTCCAAAGACAACAATGCTG
LOC_Os07g07690
Os.49102.1.S2_x_at--802--2451Chr07:3860231..3860255 (25 bp)
AACAATGCTGGTAGAAGTTCTGGAA
LOC_Os07g07690
Target Sequence 
GGAAAATTGATCTAAGGCGCAGGAAAAACAAAGATTATGAAGATTCTGTCTATGTNTCTCCACAAGGAAATGGCTATTGG
TCAATCACTAAGGCTTATGCTGTGTTCCAAGAGCAGTCTAAAAGTGGGAAGCGTACAGGTAAATCATCTAAGCATAAAGC
AGGTGTTGCAGATGCTGCCTGTAATGCCATATCAGAAAATGATTTAGCAATGCTACAGAGGAATGTGGTGAAAAGGAGGA
CCAAGAAAGAACTTGGTGCTTCTAAAAAGAAGTATGAGGACAGCAGCAGCAGGAACTCCAAAGACAACAATGCTGGTAGA
AGTTCTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49102.1.S2_x_at     

Putative homologies in rice

Putative homologies in arabidopsis