Browse Element(s) Details


Os.6156.1.S1_a_at

Description gb:AK065892.1
DB_XREF= gi:32975910
TID=Os.6156.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.6156 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033125A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013044M21, full insert sequence.
FL= gb:AK065892.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4139011/11Homocysteine S-methyltransferase 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41340OsAffx.25095.5.S1_x_at1/1112+25587057..25588114transposon protein, putative, unclassified
LOC_Os12g41340OsAffx.25095.3.S1_x_at1/1112+25587057..25588114transposon protein, putative, unclassified
LOC_Os12g41350Os.54142.1.S1_at11/1112+25589064..25594650HORMA domain containing protein, expressed
LOC_Os12g41360OsAffx.7855.1.S1_at10/1112+25595542..25596342hypothetical protein
LOC_Os12g41370OsAffx.32133.1.S1_x_at11/1112+25597051..25597566RNA recognition motif family protein
LOC_Os12g41370OsAffx.32133.1.S1_at11/1112+25597051..25597566RNA recognition motif family protein
LOC_Os12g41380OsAffx.20071.1.S1_x_at11/1112+25598951..25604862Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os12g41380Os.53443.1.S1_at10/1112+25598951..25604862Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os12g41390Os.6156.1.S1_a_at11/1112+25608238..25611838Homocysteine S-methyltransferase 3, putative, expressed
LOC_Os12g41400Os.24938.1.S1_at11/1112+25613833..25618619Eukaryotic translation initiation factor 2 gamma subunit, putative, expressed
LOC_Os12g41410OsAffx.20072.1.S1_at11/1112+25622771..25624261hypothetical protein
LOC_Os12g41420OsAffx.20073.1.S1_at11/1112+25629337..25629726lectin protein kinase, putative
LOC_Os12g41420OsAffx.20077.1.S1_x_at1/1112+25629337..25629726lectin protein kinase, putative
LOC_Os12g41430OsAffx.32134.3.S1_at11/1112+25631101..25632756expressed protein
LOC_Os12g41430OsAffx.32134.1.S1_s_at11/1112+25631101..25632756expressed protein
LOC_Os12g41430Os.18757.2.S1_x_at3/1112+25631101..25632756expressed protein
LOC_Os12g41440Os.55580.1.S1_at1/1112+25635595..25639713retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
GO:0009086biological_processmethionine biosynthesis
GO:0008898molecular_functionhomocysteine S-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6156.1.S1_a_at--580--9471Chr12:25611232..25611256 (25 bp)
TCAGACGGTGATTTTGTTTCCTACG
LOC_Os12g41390
Os.6156.1.S1_a_at--990--10631Chr12:25611360..25611384 (25 bp)
TTCGCTGCATTTACCTGTGGCATAG
LOC_Os12g41390
Os.6156.1.S1_a_at--133--8671Chr12:25611375..25611399 (25 bp)
TGTGGCATAGAGTTGCACGCTCCTT
LOC_Os12g41390
Os.6156.1.S1_a_at--713--8691Chr12:25611404..25611428 (25 bp)
TGTGCTACTCATGCTGGTACCTGAA
LOC_Os12g41390
Os.6156.1.S1_a_at--448--8551Chr12:25611445..25611469 (25 bp)
TGGAGGTCCTTACTAGCAGCATGAT
LOC_Os12g41390
Os.6156.1.S1_a_at--1119--691Chr12:25611484..25611508 (25 bp)
ATGAGATGGCTCTGCACTTACACTT
LOC_Os12g41390
Os.6156.1.S1_a_at--682--9131Chr12:25611520..25611544 (25 bp)
TGCGTTTCGTCTGAGTTCTTAAAGT
LOC_Os12g41390
Os.6156.1.S1_a_at--111--6631Chr12:25611685..25611709 (25 bp)
GTTGTGCAGACCTGAGCCTGTTATA
LOC_Os12g41390
Os.6156.1.S1_a_at--664--9791Chr12:25611708..25611732 (25 bp)
TAAGAGCCTATGTTGTGTACTACTA
LOC_Os12g41390
Os.6156.1.S1_a_at--257--9131Chr12:25611737..25611761 (25 bp)
TGCTGTACTACTACTACCCTGTGAA
LOC_Os12g41390
Os.6156.1.S1_a_at--1126--9951Chr12:25611751..25611775 (25 bp)
TACCCTGTGAACTCTTGTTTTGCTA
LOC_Os12g41390
Target Sequence 
TCAGACGGTGATTTTGTTTCCTACGTAAACGAATGGTGCAAAGATGGGGCTGTCCTCATTGGCGGCTGCTGCAGGACAAC
TCCAAACACCATCAAGGCCATAAGTAGATCACTTAACCAACGCCACTCTTCGCTGCATTTACCTGTGGCATAGAGTTGCA
CGCTCCTTCAGGTGTGCTACTCATGCTGGTACCTGAACCTGATGAACATATCCTGGAGGTCCTTACTAGCAGCATGATGT
TCTCTGCTGCAAATGAGATGGCTCTGCACTTACACTTGCGAATAACTGTGCGTTTCGTCTGAGTTCTTAAAGTTGCCCAA
TCTGGAGGTACAACCTACCAAGAAGGATTAGCAAGCAGAAAACAGTGATAGTGAACTGTTCTACTAAGTAAGTAACAAGT
GAGTGAAAACAATCTGCGGCAAAGTTGATGAAGCTTGTAAGCTATCAAGAGTTGTTGTGCAGACCTGAGCCTGTTATAAG
AGCCTATGTTGTGTACTACTACTACTGCTGTACTACTACTACCCTGTGAACTCTTGTTTTGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6156.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis