Browse Element(s) Details


Os.6225.2.S1_at

Description gb:AK108056.1
DB_XREF= gi:32993265
TID=Os.6225.2
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6225 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-156-H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-137-H12, full insert sequence.
FL= gb:AK108056.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3093011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g30894Os.11737.1.A1_at11/116+17937102..17969693HEAT repeat family protein, expressed
LOC_Os06g30894OsAffx.27894.1.S1_at11/116+17937102..17969693HEAT repeat family protein, expressed
LOC_Os06g30910Os.16261.1.S1_at11/116+17972898..17977690CAAX amino terminal protease family protein, expressed
LOC_Os06g30920Os.50508.1.S1_at4/116+17983456..17983849hypothetical protein
LOC_Os06g30930Os.6225.2.S1_at11/116+17992240..17994417expressed protein
LOC_Os06g30940Os.55063.1.S1_at10/116+17996704..17999862pentatricopeptide, putative, expressed
LOC_Os06g30940OsAffx.20579.1.S1_at1/116+17996704..17999862pentatricopeptide, putative, expressed
LOC_Os06g30940OsAffx.20579.1.S1_x_at1/116+17996704..17999862pentatricopeptide, putative, expressed
LOC_Os06g30950Os.35365.1.S1_at11/116+18001698..18008342integral membrane protein, putative, expressed
LOC_Os06g30960OsAffx.15689.1.S1_at11/116+18011565..18012696hypothetical protein
LOC_Os06g30970Os.322.1.S1_at11/116+18014523..18016698Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6225.2.S1_at--1056--2771Chr06:17993825..17993849 (25 bp)
AAGAGTCGATTTGTCTCACCAGAAG
LOC_Os06g30930
Os.6225.2.S1_at--512--771Chr06:17993850..17993874 (25 bp)
ATGTCCGTGGGACGCATACACACAG
LOC_Os06g30930
Os.6225.2.S1_at--461--5431Chr06:17993887..17993911 (25 bp)
GAACCAGTGCCCCAAGATACATGAT
LOC_Os06g30930
Os.6225.2.S1_at--524--3611Chr06:17993920..17993944 (25 bp)
CTTGGTGCGTTTTTTATCCTGTACA
LOC_Os06g30930
Os.6225.2.S1_at--547--631Chr06:17994023..17994047 (25 bp)
ATGCTTGCATTCTTGCAGCTGCAAC
LOC_Os06g30930
Os.6225.2.S1_at--564--2431Chr06:17994135..17994159 (25 bp)
AAAAGCATCTGGTCGTATTGTTAGC
LOC_Os06g30930
Os.6225.2.S1_at--1144--6791Chr06:17994200..17994224 (25 bp)
GTTTTGTTCTGTTCACATTTCTTGA
LOC_Os06g30930
Os.6225.2.S1_at--880--931Chr06:17994235..17994259 (25 bp)
AGGACACTAATCATTTCACTCCCTT
LOC_Os06g30930
Os.6225.2.S1_at--199--4731Chr06:17994266..17994290 (25 bp)
GCTGGTCTACAGCATATCTTTGATA
LOC_Os06g30930
Os.6225.2.S1_at--742--8771Chr06:17994361..17994385 (25 bp)
TGTTTCTTTTTCTGCAGCTGAACGA
LOC_Os06g30930
Os.6225.2.S1_at--736--1571Chr06:17994376..17994400 (25 bp)
AGCTGAACGACAACCACCATTTATG
LOC_Os06g30930
Target Sequence 
AAGAGTCGATTTGTCTCACCAGAAGATGTCCGTGGGACGCATACACACAGCCAATCAGTAGAGAACCAGTGCCCCAAGAT
ACATGATTCAAACTTCTTGGTGCGTTTTTTATCCTGTACATTAGCTATAGCTAAGAATTCTTTAAGATTTGAGAGGATTG
GTGGNGCACTCGGTAATACCGCGATGTTTGCAGTAAGTATGCTTGCATTCTTGCAGCTGCAACAAGTGGCCTTTGGTAAA
CAAACTCCAGCAGTACAATGTAGACGAGTCAATTATTTTCATTCTCAGATGTCTGTAAAGAACACTAAAGAAAAGCATCT
GGTCGTATTGTTAGCTAGAGGATGAGGAAATCATCATTGTTTGATGTATAGATNAAGTTTTGTTCTGTTCACATTTCTTG
AAAGTTTTGTTAGGACACTAATCATTTCACTCCCTTGGATNGGCTGGTCTACAGCATATCTTTGATAGGAAGTTGTACCA
CATGAGTTGTAAATGGTTTTAGATTGGCAATAGATGAACTGGCAGGGCTTGTAAGCTTGTTTCTTTTTCTGCAGCTGAAC
GACAACCACCATTTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6225.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis