Browse Element(s) Details


Os.6237.1.S1_at

Description gb:AK063589.1
DB_XREF= gi:32973607
TID=Os.6237.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6237 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-118-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-A10, full insert sequence.
FL= gb:AK063589.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0248011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02440NANA5+809476..809823hypothetical protein
LOC_Os05g02450Os.54606.1.S1_at11/115+813789..816137expressed protein
LOC_Os05g02450Os.56980.1.S1_at11/115+813789..816137expressed protein
LOC_Os05g02460OsAffx.26694.1.S1_at11/115+819840..820509hypothetical protein
LOC_Os05g02470OsAffx.14504.1.S1_at10/115+823531..825261hypothetical protein
LOC_Os05g02480Os.6237.1.S1_at11/115+827192..828400expressed protein
LOC_Os05g02490Os.7790.1.S1_at11/115+829801..836087Adenosine 3'-phospho 5'-phosphosulfate transporter 1, putative, expressed
LOC_Os05g02490OsAffx.21596.1.S1_at1/115+829801..836087Adenosine 3'-phospho 5'-phosphosulfate transporter 1, putative, expressed
LOC_Os05g02500OsAffx.14505.1.S1_x_at11/115+836423..840267MAP kinase phosphatase, putative, expressed
LOC_Os05g02500OsAffx.14505.1.S1_at11/115+836423..840267MAP kinase phosphatase, putative, expressed
LOC_Os05g02500Os.16976.1.S1_at11/115+836423..840267MAP kinase phosphatase, putative, expressed
LOC_Os05g02510Os.9285.1.S1_s_at10/115+843032..848821Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os05g02520Os.28047.1.S1_at11/115+851191..854118legumin, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6237.1.S1_at--1055--3771Chr05:827764..827788 (25 bp)
CTCGTGACGTACATGGTGACGGACG
LOC_Os05g02480
Os.6237.1.S1_at--162--4971Chr05:827822..827846 (25 bp)
GCATCACTCTCATCAACAAGTTCAG
LOC_Os05g02480
Os.6237.1.S1_at--266--3391Chr05:827844..827868 (25 bp)
CAGCGTCGGCAAAGACGTCGAGCTT
LOC_Os05g02480
Os.6237.1.S1_at--127--5931Chr05:827863..827887 (25 bp)
GAGCTTGCCGAGAAGTACGTCAGCA
LOC_Os05g02480
Os.6237.1.S1_at--920--1711Chr05:828218..828242 (25 bp)
ACCAGTGCTTTTTATCGATGCCGCA
LOC_Os05g02480
Os.6237.1.S1_at--29--10631Chr05:828252..828276 (25 bp)
TTCGATTTGCTTGCTGCCCATTTCG
LOC_Os05g02480
Os.6237.1.S1_at--456--10651Chr05:828273..828297 (25 bp)
TTCGCCTTATTTTGCTCCATGTCTG
LOC_Os05g02480
Os.6237.1.S1_at--916--1471Chr05:828302..828326 (25 bp)
AGAATTCAGTGTGTCTGCCTCGCAT
LOC_Os05g02480
Os.6237.1.S1_at--658--7171Chr05:828314..828338 (25 bp)
GTCTGCCTCGCATCAATGTTTAGTT
LOC_Os05g02480
Os.6237.1.S1_at--880--1231Chr05:828335..828359 (25 bp)
AGTTGCTCTGTATTAGTACTGGACA
LOC_Os05g02480
Os.6237.1.S1_at--119--7012Chr05:828350..828374 (25 bp)
GTACTGGACATGATCTATCTATCTA
LOC_Os05g02480
Target Sequence 
CTCGTGACGTACATGGTGACGGACGGGCTGGAGGTGACGCCCATGTCGGCCATCTCCAGCATCACTCTCATCAACAAGTT
CAGCGTCGGCAAAGACGTCGAGCTTGCCGAGAAGTACGTCAGCATCGCCATGGACGAGGGGCTGGGCATTCTGAAGGCGN
NNCTGCGCTCTGACACGGTGCTCTCCGACGTNTTCCTCGCCAAGAAGAAGTGAAACAACCAGTGCTTTTTATCGATGCCG
CATGGACGTTNTTCGATTTGCTTGCTGCCCATTTCGCCTTATTTTGCTCCATGTCTGCTTCAGAATTCAGTGTGTCTGCC
TCGCATCAATGTTTAGTTGCTCTGTATTAGTACTGGACATGATCTATCTATCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6237.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis