Browse Element(s) Details


Os.6247.1.S1_at

Description gb:AK100449.1
DB_XREF= gi:32985658
TID=Os.6247.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.6247 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023090P12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023090P12, full insert sequence.
FL= gb:AK067774.1 gb:AK100449.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3635011/11Glycosyl hydrolase family 9 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36300Os.10132.1.S1_at11/119+20945436..20952440Lon protease homolog 1, mitochondrial precursor, putative, expressed
LOC_Os09g36310OsAffx.18010.1.S1_at10/119+20959121..20960632hypothetical protein
LOC_Os09g36320Os.17034.1.S1_at11/119+20961747..20967032serine/threonine-protein kinase NAK, putative, expressed
LOC_Os09g36330OsAffx.6492.1.S1_at11/119+20969412..20970433hypothetical protein
LOC_Os09g36340OsAffx.6493.1.S1_at10/119+20971299..20974745HVA22-like protein i, putative
LOC_Os09g36350Os.6247.1.S1_at11/119+20975968..20980170Glycosyl hydrolase family 9 protein, expressed
LOC_Os09g36360Os.16049.1.S1_at11/119+20983249..20985898expressed protein
LOC_Os09g36370OsAffx.30150.5.S1_s_at11/119+20987969..20993985ER lumen protein retaining receptor containing protein, expressed
LOC_Os09g36380OsAffx.18011.1.S1_at11/119+20994752..20995183hypothetical protein
LOC_Os09g36390OsAffx.18012.1.S1_at11/119+20997164..20998417hypothetical protein
LOC_Os09g36400NANA9+21002611..21006961hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6247.1.S1_at--556--8651Chr09:20976534..20976558 (25 bp)
TGGGCGGGCCGTTCCAGAATGACAC
LOC_Os09g36350
Os.6247.1.S1_at--585--1471Chr09:20976519..20976543 (25 bp)
AGAATGACACTTTCGTCGACTCTCG
LOC_Os09g36350
Os.6247.1.S1_at--126--8671Chr09:20976410..20976434 (25 bp)
TGTGGCGCAGTCGTTCACCTAGAGC
LOC_Os09g36350
Os.6247.1.S1_at--715--4811Chr09:20976387..20976411 (25 bp)
GCTCTCTCAGAGTTTGGGCAATGGC
LOC_Os09g36350
Os.6247.1.S1_at--532--851Chr09:20976367..20976391 (25 bp)
ATGGCTTTGACCAACCGGGAGGATA
LOC_Os09g36350
Os.6247.1.S1_at--484--8791Chr09:20976267..20976291 (25 bp)
TGTTCTTCGTTGTTCATCTTTTGGG
LOC_Os09g36350
Os.6247.1.S1_at--60--1231Chr09:20976221..20976245 (25 bp)
AGTTCTTGTGCCATAGTGCTATTGT
LOC_Os09g36350
Os.6247.1.S1_at--861--3091Chr09:20976189..20976213 (25 bp)
AATACTGCTGCGTAGTTGCATCCGG
LOC_Os09g36350
Os.6247.1.S1_at--148--9051Chr09:20976173..20976197 (25 bp)
TGCATCCGGTTTGCTGGTGTACTAT
LOC_Os09g36350
Os.6247.1.S1_at--803--8111Chr09:20976122..20976146 (25 bp)
GGACGGATTCCATTTGTTGATTCTA
LOC_Os09g36350
Os.6247.1.S1_at--328--6291Chr09:20976073..20976097 (25 bp)
GATGATCTGTAAAATCCCTCCCAAG
LOC_Os09g36350
Target Sequence 
TGGGCGGGCCGTTCCAGAATGACACTTTCGTCGACTCTCGGGACAANGCTGTTCAGACAGAGTCAAGCACTTACAACAGC
GGCACCCTNGTTGGTCTTCTTTCTGGTCTGGTCACAACTTCCTCTGTGGCGCAGTCGTTCACCTAGAGCTCTCTCAGAGT
TTGGGCAATGGCTTTGACCAACCGGGAGGATATACATGTAGCCATGTACAATGANAGATTTTTGGCGTGACCAANGGCAA
TGTGCCATCAGCGAAACNCCTTCACGGTGTTCTTCGTTGTTCATCTTTTGGGTGATGGGTGGTTAGCAGTAGTAGTTCTT
GTGCCATAGTGCTATTGTTTATACAAATACTGCTGCGTAGTTGCATCCGGTTTGCTGGTGTACTATCTGATACTACGAGT
GTTGTATTTGTAGGACGGATTCCATTTGTTGATTCTAAAATGATCTCTGGTAGCTTGTATTGATGATCTGTAAAATCCCT
CCCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6247.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis