Browse Element(s) Details


Os.6248.1.S1_s_at

Description gb:AU166824
DB_XREF= gi:12405223
DB_XREF=AU166824
CLONE=C51072
TID=Os.6248.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.6248 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_188112.1 (A.thaliana) phosphoenolpyruvate carboxylase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2784011/11Phosphoenolpyruvate carboxylase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27810OsAffx.29386.2.S1_at11/118+16806753..16808943Calcium binding EGF domain containing protein, expressed
LOC_Os08g27810OsAffx.29386.1.S1_x_at11/118+16806753..16808943Calcium binding EGF domain containing protein, expressed
LOC_Os08g27810OsAffx.29386.1.S1_at11/118+16806753..16808943Calcium binding EGF domain containing protein, expressed
LOC_Os08g27824Os.21286.1.S1_at11/118+16813642..16827150NOL1/NOP2/sun family protein, putative, expressed
LOC_Os08g27824Os.21286.2.S1_x_at10/118+16813642..16827150NOL1/NOP2/sun family protein, putative, expressed
LOC_Os08g27824Os.21286.2.S1_at10/118+16813642..16827150NOL1/NOP2/sun family protein, putative, expressed
LOC_Os08g27840Os.6248.1.S1_s_at11/118+16831868..16837720Phosphoenolpyruvate carboxylase 2, putative, expressed
LOC_Os08g27840Os.10454.1.S1_a_at11/118+16831868..16837720Phosphoenolpyruvate carboxylase 2, putative, expressed
LOC_Os08g27840Os.45901.1.S1_x_at2/118+16831868..16837720Phosphoenolpyruvate carboxylase 2, putative, expressed
LOC_Os08g27850Os.7897.1.S1_at11/118+16849431..16852585Endothelial differentiation-related factor 1, putative, expressed
LOC_Os08g27860Os.11625.1.S1_at11/118+16855631..16858524expressed protein
LOC_Os08g27860OsAffx.5959.1.S1_x_at9/118+16855631..16858524expressed protein
LOC_Os08g27870OsAffx.29387.1.S1_at11/118+16861751..16864039hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006099biological_processtricarboxylic acid cycle
GO:0008964molecular_functionphosphoenolpyruvate carboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6248.1.S1_s_at--34--4231Chr08:16832133..16832157 (25 bp)
CCGTTTTATATGGACTCTTATCTTG
LOC_Os08g27840
Os.6248.1.S1_s_at--769--6811Chr08:16832131..16832155 (25 bp)
GTTTTATATGGACTCTTATCTTGAT
LOC_Os08g27840
Os.6248.1.S1_s_at--352--10191Chr08:16832127..16832151 (25 bp)
TATATGGACTCTTATCTTGATTTCG
LOC_Os08g27840
Os.6248.1.S1_s_at--351--271Chr08:16832126..16832150 (25 bp)
ATATGGACTCTTATCTTGATTTCGG
LOC_Os08g27840
Os.6248.1.S1_s_at--80--10111Chr08:16832125..16832149 (25 bp)
TATGGACTCTTATCTTGATTTCGGT
LOC_Os08g27840
Os.6248.1.S1_s_at--1081--9551Chr08:16832118..16832142 (25 bp)
TCTTATCTTGATTTCGGTCATTTGC
LOC_Os08g27840
Os.6248.1.S1_s_at--421--10431Chr08:16832116..16832140 (25 bp)
TTATCTTGATTTCGGTCATTTGCTC
LOC_Os08g27840
Os.6248.1.S1_s_at--587--431Chr08:16832114..16832138 (25 bp)
ATCTTGATTTCGGTCATTTGCTCTC
LOC_Os08g27840
Os.6248.1.S1_s_at--1059--9571Chr08:16832113..16832137 (25 bp)
TCTTGATTTCGGTCATTTGCTCTCG
LOC_Os08g27840
Os.6248.1.S1_s_at--57--3631Chr08:16832112..16832136 (25 bp)
CTTGATTTCGGTCATTTGCTCTCGG
LOC_Os08g27840
Os.6248.1.S1_s_at--659--8831Chr08:16832110..16832134 (25 bp)
TGATTTCGGTCATTTGCTCTCGGCC
LOC_Os08g27840
Target Sequence 
CCGTTTTATATGGACTCTTATCTTGATTTCGGTCATTTGCTCTCGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6248.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis