Browse Element(s) Details


Os.6304.1.S1_at

Description gb:AK108881.1
DB_XREF= gi:32994090
TID=Os.6304.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6304 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-152-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-152-D07, full insert sequence.
FL= gb:AK108881.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g310909/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31070OsAffx.17257.1.S1_at11/118+19051528..19053502expressed protein
LOC_Os08g31070OsAffx.1396.1.S1_x_at2/118+19051528..19053502expressed protein
LOC_Os08g31080OsAffx.17258.1.S1_at11/118+19057948..19059318expressed protein
LOC_Os08g31090OsAffx.17259.1.S1_s_at11/118+19073822..19075071expressed protein
LOC_Os08g31090Os.6304.1.S1_at9/118+19073822..19075071expressed protein
LOC_Os08g31100Os.48015.1.A1_x_at1/118+19078097..19078542retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g31110Os.50396.1.S1_at11/118+19082987..19084967fertility restorer homologue, putative, expressed
LOC_Os08g31120OsAffx.31487.1.S1_at11/118+19087627..19088273hypothetical protein
LOC_Os08g31130Os.53050.1.S1_at11/118+19089242..19094679Integral membrane protein DUF6 containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6304.1.S1_at--504--2011Chr08:19074755..19074779 (25 bp)
ACTCTACACGATCCTTGTCGCGTGG
LOC_Os08g31090
Os.6304.1.S1_at--553--8711Chr08:19074770..19074794 (25 bp)
TGTCGCGTGGTTTCGCTTGGTTAGA
LOC_Os08g31090
Os.6304.1.S1_at--567--10791Chr08:19074807..19074831 (25 bp)
TTGTTCATTGTGACGGATCAACGCT
LOC_Os08g31090
Os.6304.1.S1_at--873--6451Chr08:19074822..19074846 (25 bp)
GATCAACGCTACAACACACAACAAT
LOC_Os08g31090
Os.6304.1.S1_at--33--9131Chr08:19074914..19074938 (25 bp)
TGCTGGGACATGTCTCGTAGCTCAA
LOC_Os08g31090
Os.6304.1.S1_at--894--6951Chr08:19074930..19074954 (25 bp)
GTAGCTCAAGATCAGAAGCGTTTGG
LOC_Os08g31090
Os.6304.1.S1_at--134--4631Chr08:19074947..19074971 (25 bp)
GCGTTTGGTGACTCAGTTTGCGATC
LOC_Os08g31090
Os.6304.1.S1_at--1073--6831Chr08:19074962..19074986 (25 bp)
GTTTGCGATCCATCCGAAGGATTTT
LOC_Os08g31090
Os.6304.1.S1_at--179--4051Chr08:19074987..19075189 (25 bp)
CGATCTTGGATCTAGGCTCTGTTGA
NONE
Os.6304.1.S1_at--1016--6651Chr08:19075006..19075030 (25 bp)
GTTGAGCTGCTTTTATTATTTGTGA
LOC_Os08g31090
Os.6304.1.S1_at--204--6231Chr08:19075053..19075077 (25 bp)
GATGGCGTCGATCGAGCCGAAAATT
NONE
Target Sequence 
ACTCTACACGATCCTTGTCGCGTGGTTTCGCTTGGTTAGATAGGGGATTTGTTTGTTCATTGTGACGGATCAACGCTACA
ACACACAACAATTTTGGATTGTTTACTTATACTTGTAGTACATACTACTACAAAATTTGTGATTCAAATATGATTCAAAT
GCTGGGACATGTCTCGTAGCTCAAGATCAGAAGCGTTTGGTGACTCAGTTTGCGATCCATCCGAAGGATTTTCGATCTTG
GATCTAGGCTCTGTTGAGCTGCTTTTATTATTTGTGATTGCAAGATCGAATGAATAGAAGATGGCGTCGATCGAGCCGAA
AATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6304.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis