Browse Element(s) Details


Os.6348.1.S1_x_at

Description gb:AK070275.1
DB_XREF= gi:32980299
TID=Os.6348.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6348 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023125E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023049I04, full insert sequence.
FL= gb:AK070275.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4573011/11Pectinesterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45690NANA11+27127158..27133314transposon protein, putative, unclassified
LOC_Os11g45710Os.26441.1.S1_s_at11/1111+27141896..27148422glycosyl hydrolase family 1 protein, putative, expressed
LOC_Os11g45710Os.26441.1.S1_at11/1111+27141896..27148422glycosyl hydrolase family 1 protein, putative, expressed
LOC_Os11g45710Os.26441.2.S1_at11/1111+27141896..27148422glycosyl hydrolase family 1 protein, putative, expressed
LOC_Os11g45720Os.8099.1.S1_at11/1111+27149444..27151602Pectinesterase family protein, expressed
LOC_Os11g45730Os.6348.1.S1_x_at11/1111+27153663..27155847Pectinesterase family protein, expressed
LOC_Os11g45740Os.2867.1.A1_at11/1111+27163514..27166514expressed protein
LOC_Os11g45750Os.50411.2.S1_x_at11/1111+27176833..27188263NB-ARC domain containing protein, expressed
LOC_Os11g45750Os.50411.1.S1_at11/1111+27176833..27188263NB-ARC domain containing protein, expressed
LOC_Os11g45750Os.50411.2.S1_at10/1111+27176833..27188263NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005618cellular_componentcell wall
GO:0005737cellular_componentcytoplasm
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0030599molecular_functionpectinesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6348.1.S1_x_at--677--9371Chr11:27154566..27154591 (25 bp)
TCGACCTCACCGAGGAGAGGCCAAG
LOC_Os11g45730
Os.6348.1.S1_x_at--508--7631Chr11:27154121..27154145 (25 bp)
GGGACATCAACGTCATCTAGCTCAG
LOC_Os11g45730
Os.6348.1.S1_x_at--46--451Chr11:27154107..27154131 (25 bp)
ATCTAGCTCAGCTTCAACGTCGAGC
LOC_Os11g45730
Os.6348.1.S1_x_at--193--1491Chr11:27154068..27154092 (25 bp)
AGCACCGACGGCGAGTAGTAACTCA
LOC_Os11g45730
Os.6348.1.S1_x_at--1095--6931Chr11:27154054..27154078 (25 bp)
GTAGTAACTCAACTGCATCGGCTAA
LOC_Os11g45730
Os.6348.1.S1_x_at--908--9131Chr11:27153975..27153999 (25 bp)
TGCGTCAGCGACGACGAGTAATTCC
LOC_Os11g45730
Os.6348.1.S1_x_at--259--4591Chr11:27153941..27153965 (25 bp)
GCGAAGGCGACTAATTACTCGAGTT
LOC_Os11g45730
Os.6348.1.S1_x_at--1053--10031Chr11:27153893..27153917 (25 bp)
TAGTTAATACAAGTGCAGCGGCGAC
LOC_Os11g45730
Os.6348.1.S1_x_at--1073--4511Chr11:27153812..27153836 (25 bp)
GCCCGTTTAATTGTTCATTCTTTGT
LOC_Os11g45730
Os.6348.1.S1_x_at--714--8411Chr11:27153761..27153785 (25 bp)
GGCCGGCTACTTAGATGTTTCACGT
LOC_Os11g45730
Os.6348.1.S1_x_at--155--3431Chr11:27153728..27153752 (25 bp)
CAGTTGTATTTTCTTCCCATTTCGT
LOC_Os11g45730
Target Sequence 
TCGACCTCACCGAGGAGAGGCCAAGNNNNNNNNCGGCACGCACTACNTCTACGNCGACTCCTGNCTCATCCCACCAGACG
GGACATCAACGTCATCTAGCTCAGCTTCAACGTCGAGCAACTCNAACCGCGGAAGCACCGACGGCGAGTAGTAACTCAAC
TGCATCGGCTAATAAAAAGGAAAGCAATTCAACTGCAGAAGCNCCGACGGCGACTAGCTACTCAANTGCGTCAGCGACGA
CGAGTAATTCCNNTGCGTCAGCGAAGGCGACTAATTACTCGAGTTCAAGTCCACCGGCAAAAGGCAAGTAGTTAATACAA
GTGCAGCGGCGACGACGGCGCCGANCGCGATGAATCGCGTTCATTGGGGCCAACCAATTCTGTTTTGGAAGCCCGTTTAA
TTGTTCATTCTTTGTGTCAATTTGGGCCGGATTAATCAATCGGCCGGCTACTTAGATGTTTCACGTACGTGTAACAGTTG
TATTTTCTTCCCATTTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6348.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis