Browse Element(s) Details


Os.6379.1.S1_at

Description gb:CA767365
DB_XREF= gi:27547232
DB_XREF=AF53-Rpf_07_M23_T7_088.ab1
CLONE=C0002615
TID=Os.6379.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.6379 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with strong similarity to protein sp:P53493 (A.thaliana) ACT3_ARATH Actin 3
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g443501/11Actin-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g44310Os.10598.1.S1_at10/1112+27431232..274384309,10-9',10' carotenoid cleavage dioxygenase 1, putative, expressed
LOC_Os12g44320OsAffx.20117.1.S1_s_at11/1112+27440868..27443689D-mannose binding lectin family protein, expressed
LOC_Os12g44320Os.55718.1.S1_x_at11/1112+27440868..27443689D-mannose binding lectin family protein, expressed
LOC_Os12g44320Os.55718.1.S1_at11/1112+27440868..27443689D-mannose binding lectin family protein, expressed
LOC_Os12g44330Os.17376.2.S1_at11/1112+27446516..27452843Protein kinase domain containing protein, expressed
LOC_Os12g44330Os.17376.2.S1_x_at11/1112+27446516..27452843Protein kinase domain containing protein, expressed
LOC_Os12g44340Os.26364.1.S1_at11/1112+27453510..27457977expressed protein
LOC_Os12g44350Os.6379.1.S1_at1/1112+27458264..27459555Actin-1, putative, expressed
LOC_Os12g44360Os.53872.1.S1_at11/1112+27462128..27474827Plasma membrane Na+/H+ antiporter, putative, expressed
LOC_Os12g44360Os.7094.1.S1_a_at11/1112+27462128..27474827Plasma membrane Na+/H+ antiporter, putative, expressed
LOC_Os12g44370Os.16279.1.S1_at11/1112+27479011..27480174expressed protein
LOC_Os12g44380Os.26353.1.S1_at11/1112+27480325..27484463sucrose/H+ symporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007010biological_processcytoskeleton organization and biogenesis
GO:0030036biological_processactin cytoskeleton organization and biogenesis
GO:0005739cellular_componentmitochondrion
GO:0005856cellular_componentcytoskeleton
GO:0005200molecular_functionstructural constituent of cytoskeleton
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6379.1.S1_at--690--4531Chr12:27459423..27459447 (25 bp)
GCCCGAGAGGAAGTACTCCGTCTGG
LOC_Os12g44350
Os.6379.1.S1_at--810--9671Chr12:27459859..27459883 (25 bp)
TCACCGAAAGTGCTTCTAATTTCTT
NONE
Os.6379.1.S1_at--523--10411Chr12:27460022..27460046 (25 bp)
TTATAAGAGTACGTCACCACCACAC
NONE
Os.6379.1.S1_at--10--9251Chr12:27460072..27460096 (25 bp)
TCCATTTCTCCCCTATTTTCTTTCT
NONE
Os.6379.1.S1_at--209--10051Chr12:27460139..27460163 (25 bp)
TAGATATTACTATGTTTGCTTCTTC
NONE
Os.6379.1.S1_at--912--10331Chr12:27460167..27460191 (25 bp)
TTTTTCCCTTTCATTTGGAGGCTGT
NONE
Os.6379.1.S1_at--275--3571Chr12:27460178..27460202 (25 bp)
CATTTGGAGGCTGTACGTGTTTGAT
NONE
Os.6379.1.S1_at--16--171Chr12:27460210..27460234 (25 bp)
ATTATTTTGCCTGTATACGCTGTAA
NONE
Os.6379.1.S1_at--216--311Chr12:27460224..27460248 (25 bp)
ATACGCTGTAAGTGCATCGATCTCA
NONE
Os.6379.1.S1_at--774--6431Chr12:27460256..27460280 (25 bp)
GATCATCATCAACTTATCCATCCGG
NONE
Os.6379.1.S1_at--714--7811Chr12:27460291..27460315 (25 bp)
GGTCTATATCTTTCATTTCCATTCT
NONE
Target Sequence 
GCCCGAGAGGAAGTACTCCGTCTGGATCGGAGGCTCCATCCTCGCATCACTCAGCACCTTCCAGCAGATGTGGATTGCCA
AGGCTGAGTACGACGAGTCCGGCCCCTCCATCGTTCACCGAAAGTGCTTCTAATTTCTTTTTTTACCTATTAATTAATGA
TTAATCCTTAATTAAAAAACAACAATAAACTAACTAAGCACCACATAATATATATATGCTACTTATAAGAGTACGTCACC
ACCACACCGCTCCTCACGTCCAGCTTCCTTTTTCCATTTCTCCCCTATTTTCTTTCTTATACACTACAATTATCCANTCA
TTTGGAGGTAGACCTTATATAGATATTACTATGTTTGCTTCTTCTTTTTTTTCCCTTTCATTTGGAGGCTGTACGTGTTT
GATTATTATTATTATTTTGCCTGTATACGCTGTAAGTGCATCGATCTCACAAGATCGATCATCATCAACTTATCCATCCG
GATTGAAATATGGTCTATATCTTTCATTTCCATTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6379.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis