Browse Element(s) Details


Os.6385.1.S1_at

Description gb:AF094773.1
DB_XREF= gi:3789947
GEN=eIF-5A
TID=Os.6385.1
CNT=90
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6385 (NCBI UniGene Cluster)
DEF=Oryza sativa translation initiation factor 5A (eIF-5A) mRNA, complete cds.
PROD=translation initiation factor 5A
FL= gb:AK103429.1 gb:AK062134.1 gb:AF094773.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4058011/11Eukaryotic translation initiation factor 5A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40550Os.22263.1.S1_a_at11/117+24291094..24297488protein kinase family protein, putative, expressed
LOC_Os07g40560NANA7+24306547..24307191hypothetical protein
LOC_Os07g40570Os.23384.1.A1_at11/117+24310208..24313688WRKY DNA binding domain containing protein, expressed
LOC_Os07g40580Os.6385.1.S1_at11/117+24316007..24319279Eukaryotic translation initiation factor 5A, putative, expressed
LOC_Os07g40580Os.57480.1.S1_x_at1/117+24316007..24319279Eukaryotic translation initiation factor 5A, putative, expressed
LOC_Os07g40590Os.31312.1.S1_at6/117+24321692..24325314retrotransposon protein, putative, unclassified
LOC_Os07g40600NANA7+24327386..24328414retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g40610NANA7+24328754..24334910retrotransposon protein, putative, unclassified
LOC_Os07g40620Os.11328.1.S1_at11/117+24339496..24344274saccharopine dehydrogenase family protein, expressed
LOC_Os07g40620OsAffx.28164.2.S1_at1/117+24339496..24344274saccharopine dehydrogenase family protein, expressed
LOC_Os07g40620Os.46481.2.S1_x_at1/117+24339496..24344274saccharopine dehydrogenase family protein, expressed
LOC_Os07g40620Os.27137.1.S1_at1/117+24339496..24344274saccharopine dehydrogenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0003743molecular_functiontranslation initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6385.1.S1_at--272--3331Chr07:24317835..24317859 (25 bp)
CACTTTGTTGCCATAGATATATTCA
LOC_Os07g40580
Os.6385.1.S1_at--362--6291Chr07:24317629..24317650 (22 bp)
GATGTTCCACATGTGAACCGCACAG
LOC_Os07g40580
Os.6385.1.S1_at--1087--5431Chr07:24317615..24317639 (25 bp)
GAACCGCACAGAGTACCAGCTGATT
LOC_Os07g40580
Os.6385.1.S1_at--625--4491Chr07:24316405..24316429 (25 bp)
GCCCCAAGTAACTCCCTCAAGTGGA
LOC_Os07g40580
Os.6385.1.S1_at--336--5051Chr07:24316312..24316336 (25 bp)
GCAGAACAGAGGGATCCTTATGTAT
LOC_Os07g40580
Os.6385.1.S1_at--343--1071Chr07:24316303..24316327 (25 bp)
AGGGATCCTTATGTATCAAACCTAA
LOC_Os07g40580
Os.6385.1.S1_at--813--611Chr07:24316247..24316271 (25 bp)
ATGCTACAAAAGACATCCACCCAGC
LOC_Os07g40580
Os.6385.1.S1_at--849--2431Chr07:24316240..24316264 (25 bp)
AAAAGACATCCACCCAGCTTGAAGC
LOC_Os07g40580
Os.6385.1.S1_at--383--1811Chr07:24316229..24316253 (25 bp)
ACCCAGCTTGAAGCCGCAGTAACAA
LOC_Os07g40580
Os.6385.1.S1_at--1122--5411Chr07:24316220..24316244 (25 bp)
GAAGCCGCAGTAACAAGTGCAGTGA
LOC_Os07g40580
Os.6385.1.S1_at--1042--2451Chr07:24316209..24316233 (25 bp)
AACAAGTGCAGTGATTGCTGGGTGT
LOC_Os07g40580
Target Sequence 
CACTTTGTTGCCATAGATATATTCAATGGTAAAAAGCTTGAGGATATTGTTCCTTCGTCCCACAACTGTGATGTTCCACA
TGTGAACCGCACAGAGTACCAGCTGATTGACATATCAGAGGATGGATTCGTGAGCCTTCTTACTGAGAGTGGTAACACTA
AGGATGATCTTAGACTCCCAACTGATGACAGTCTCCTGGGTCAGATCAAGACTGGATTTGGTGAAGGCAAGGATCTTGTT
GTGACTGTCATGTCCGCCATGGGGGAGGAGCAGATCTGTGCGCTGAAGGACATTGGCCCCAAGTAACTCCCTCAAGTGGA
AGGCAGAACAGAGGGGCAACTCCCTCAAGTGGAAGGCAGAACAGAGGGGTAACTCCCTCAAGTGGAAGGCAGAACAGAGG
GATCCTTATGTATCAAACCTAAACTAAAAAACAAAGACATGTATTGAGAAGGAATGCTACAAAAGACATCCACCCAGCTT
GAAGCCGCAGTAACAAGTGCAGTGATTGCTGGGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6385.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis