Browse Element(s) Details


Os.6517.1.S1_at

Description gb:AK067748.1
DB_XREF= gi:32977766
TID=Os.6517.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6517 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013118K06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013118K06, full insert sequence.
FL= gb:AK067748.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3743211/11MATE efflux family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37420OsAffx.17378.1.S1_at11/118+23578430..23578768hypothetical protein
LOC_Os08g37432OsAffx.29571.1.S1_at11/118+23579789..23584677MATE efflux family protein, expressed
LOC_Os08g37432Os.6517.1.S1_at11/118+23579789..23584677MATE efflux family protein, expressed
LOC_Os08g37444Os.4838.1.S1_s_at11/118+23584920..23589406Signal recognition particle, alpha subunit, N-terminal family protein, expressed
LOC_Os08g37456Os.11122.1.S1_at11/118+23590772..23594404oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g37470OsAffx.17379.1.S1_at11/118+23597959..23599250hypothetical protein
LOC_Os08g37480Os.10066.1.A1_at11/118+23608616..23614134Surfeit locus protein 5 containing protein, expressed
LOC_Os08g37480Os.10748.1.S1_at11/118+23608616..23614134Surfeit locus protein 5 containing protein, expressed
LOC_Os08g37480Os.10066.2.S1_at11/118+23608616..23614134Surfeit locus protein 5 containing protein, expressed
LOC_Os08g37480Os.10066.1.A1_x_at10/118+23608616..23614134Surfeit locus protein 5 containing protein, expressed
LOC_Os08g37480Os.13501.1.S1_at1/118+23608616..23614134Surfeit locus protein 5 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009835biological_processripening
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6517.1.S1_at--55--5391Chr08:23584165..23584189 (25 bp)
GAAGCAACCAAGTACCAACAGTGTG
LOC_Os08g37432
Os.6517.1.S1_at--132--6631Chr08:23584189..23584213 (25 bp)
GTTGGTGAGGTTTCTTGGACACACA
LOC_Os08g37432
Os.6517.1.S1_at--901--5371Chr08:23584238..23584262 (25 bp)
GAAGAACCGCAACTTCTGCTCAGTA
LOC_Os08g37432
Os.6517.1.S1_at--710--5291Chr08:23584310..23584334 (25 bp)
GAAGGCATAGCTGGTGTTTCACATA
LOC_Os08g37432
Os.6517.1.S1_at--522--10531Chr08:23584374..23584398 (25 bp)
TTCTGAAGACGCTCGTTTGCCAAGA
LOC_Os08g37432
Os.6517.1.S1_at--601--4431Chr08:23584468..23584492 (25 bp)
GCCTTGTAACCTGAAATTTGCACTC
LOC_Os08g37432
Os.6517.1.S1_at--240--10231Chr08:23584539..23584563 (25 bp)
TATTGCAACTGCAAGCCTGTGTGTT
LOC_Os08g37432
Os.6517.1.S1_at--600--4271Chr08:23584554..23584578 (25 bp)
CCTGTGTGTTGTTCGCGGATTGTAA
LOC_Os08g37432
Os.6517.1.S1_at--17--7931Chr08:23584570..23584594 (25 bp)
GGATTGTAAGACGTCCGGACACTAC
LOC_Os08g37432
Os.6517.1.S1_at--399--6971Chr08:23584610..23584634 (25 bp)
GTAGCCCATTACCATCGTGTATGAT
LOC_Os08g37432
Os.6517.1.S1_at--617--251Chr08:23584637..23584661 (25 bp)
ATATGCACCGAAACGAATCCACTCC
LOC_Os08g37432
Target Sequence 
GAAGCAACCAAGTACCAACAGTGTGTTGGTGAGGTTTCTTGGACACACAAAGGGGGCACTTCAGTGGGCAGCAGAAGAAC
CGCAACTTCTGCTCAGTACAAAGAGGCAAACCATCAGAATAGATCAAGAAGACGAGAACATTTTGGAAGGCATAGCTGGT
GTTTCACATATAGACATATTCACGTTACCTTAGGCTGCAGACAGCCAGTTTCTGAAGACGCTCGTTTGCCAAGAGAACAT
TGGAGAAGAGTGCAGAGGCTTGCGTAGGGTGATAGTATGTGTGAGTTGGGATTATATTTATTAGCCTTGTAACCTGAAAT
TTGCACTCGGTTGCAAGTTGCGACATGTAAGCACTGAGTATACTATTTAATGGATATTGCAACTGCAAGCCTGTGTGTTG
TTCGCGGATTGTAAGACGTCCGGACACTACAAAATGGGCCAGACGGTAGCCCATTACCATCGTGTATGATATATATGCAC
CGAAACGAATCCACTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6517.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis