Browse Element(s) Details


Os.6567.1.S1_at

Description gb:AK100323.1
DB_XREF= gi:32985532
TID=Os.6567.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6567 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023079I02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023079I02, full insert sequence.
FL= gb:AK100323.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5651011/11Phosphate transporter 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56490Os.15769.1.S1_at11/112+34578332..34579354expressed protein
LOC_Os02g56500OsAffx.12667.1.S1_x_at11/112+34590769..34594118expressed protein
LOC_Os02g56500Os.24688.1.S1_x_at11/112+34590769..34594118expressed protein
LOC_Os02g56500Os.24688.1.S1_at10/112+34590769..34594118expressed protein
LOC_Os02g56510Os.6567.1.S1_at11/112+34603539..34609180Phosphate transporter 1, putative, expressed
LOC_Os02g56510Os.51613.1.S1_x_at2/112+34603539..34609180Phosphate transporter 1, putative, expressed
LOC_Os02g56520OsAffx.24894.1.S1_at11/112+34609408..34612854peroxisomal membrane protein, putative, expressed
LOC_Os02g56530Os.47757.1.A1_at11/112+34613990..34617796KE03 protein, putative, expressed
LOC_Os02g56530Os.27744.1.S1_at10/112+34613990..34617796KE03 protein, putative, expressed
LOC_Os02g56540Os.7967.1.S1_at11/112+34626439..34630743Kinesin motor domain containing protein, expressed
LOC_Os02g56550Os.18740.1.S1_at10/112+34632017..34635209ABC transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006817biological_processphosphate transport
GO:0016021cellular_componentintegral to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6567.1.S1_at--676--7911Chr02:34608544..34608568 (25 bp)
GGTTGAGTCGCGCTTACTGGATTTC
LOC_Os02g56510
Os.6567.1.S1_at--1102--10571Chr02:34608566..34608590 (25 bp)
TTCTCGCTCGCTTCACTAGAGATAA
LOC_Os02g56510
Os.6567.1.S1_at--601--1391Chr02:34608593..34608617 (25 bp)
AGACGAGGCCATTGGAACTTCTATA
LOC_Os02g56510
Os.6567.1.S1_at--1162--2451Chr02:34608722..34608746 (25 bp)
AACAACGTTGGCAAGTTCAGAGCAG
LOC_Os02g56510
Os.6567.1.S1_at--95--9311Chr02:34608756..34608780 (25 bp)
TCCCATTACCATTCCGTGAACTTGA
LOC_Os02g56510
Os.6567.1.S1_at--747--9791Chr02:34608792..34608816 (25 bp)
TAAGCAGTAGGACATGCCGGCATGC
LOC_Os02g56510
Os.6567.1.S1_at--392--4771Chr02:34608863..34608887 (25 bp)
GCTGCTTGCCGCTAGATTTGGTACA
LOC_Os02g56510
Os.6567.1.S1_at--224--2771Chr02:34608925..34608949 (25 bp)
AAGACCATGATGTTGCTGATTAGGA
LOC_Os02g56510
Os.6567.1.S1_at--234--31Chr02:34609030..34609054 (25 bp)
ATTGTTGGGCGTCATTTCGCTAACA
LOC_Os02g56510
Os.6567.1.S1_at--193--6031Chr02:34609096..34609120 (25 bp)
GAGATGGATGCCCACCCTCCAAAAA
LOC_Os02g56510
Os.6567.1.S1_at--612--9231Chr02:34609127..34609151 (25 bp)
TCCATGAATTCATATGCACCATTGC
LOC_Os02g56510
Target Sequence 
GGTTGAGTCGCGCTTACTGGATTTCTCGCTCGCTTCACTAGAGATAATCAGACGAGGCCATTGGAACTTCTATAGATTGG
AGAATGAACATTTGAACAACGTTGGCAAGTTCAGAGCAGTGAANNCTGTCCCATTACCATTCCGTGAACTTGAAACTGAT
TGATTAAGCAGTAGGACATGCCGGCATGCNGCCAACATCAAGGCCAGTAAGGATCAGAGTTCCAGGAATGNNGATGCTGC
TTGCCGCTAGATTTGGTACATAAGTGGTAATAAAGTTTGCAGAGACCNTTGGTGCACAAGACCATGATGTTGCTGATTAG
GATGGAATAAGCTTAAATCAGAGNAGCTNANCGAGGCAGTTNGNCAAAAAAGAAGGNATAATCCCTTCTNGGTCCGATGA
AGATTGTTGGGCGTCATTTCGCTAACAAGATCTTAATTTTGTTTATGGNTGTGTTATGTATGTATCTGGAGATGGATGCC
CACCCTCCAAAAAAAATATTCCATGAATTCATATGCACCATTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6567.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis