Browse Element(s) Details


Os.6614.1.S1_at

Description gb:AK108218.1
DB_XREF= gi:32993427
TID=Os.6614.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6614 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-140-E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-E07, full insert sequence.
FL= gb:AK108218.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3132011/11SWIB/MDM2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31290OsAffx.14069.1.S1_x_at10/114+18533150..18535080Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g31290OsAffx.14069.1.S1_at9/114+18533150..18535080Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g31300OsAffx.21756.2.S1_x_at3/114+18540647..18543504transposon protein, putative, unclassified
LOC_Os04g31300OsAffx.21756.3.S1_x_at2/114+18540647..18543504transposon protein, putative, unclassified
LOC_Os04g31310OsAffx.3964.1.S1_at11/114+18545156..18546752hypothetical protein
LOC_Os04g31320Os.6614.1.S1_at11/114+18548072..18550666SWIB/MDM2 domain containing protein, expressed
LOC_Os04g31330Os.9240.1.S1_at11/114+18553235..18555852Exo70 exocyst complex subunit family protein, expressed
LOC_Os04g31340Os.14139.1.S1_at11/114+18559522..18564663SNF1-related protein kinase regulatory gamma subunit 1, putative, expressed
LOC_Os04g31350Os.49054.1.S1_at10/114+18570301..18571461expressed protein
LOC_Os04g31360OsAffx.26268.1.S1_at11/114+18573803..18574312hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6614.1.S1_at--379--5051Chr04:18550017..18550040 (24 bp)
GCAGACTTCTATAATCAACCATGGG
LOC_Os04g31320
Os.6614.1.S1_at--515--9691Chr04:18550161..18550185 (25 bp)
TAAGATACCTGAACCGCAAACCGGC
LOC_Os04g31320
Os.6614.1.S1_at--473--1771Chr04:18550180..18550204 (25 bp)
ACCGGCTAGCGGTAATGAGGGCCCA
LOC_Os04g31320
Os.6614.1.S1_at--454--1651Chr04:18550312..18550336 (25 bp)
AGCGACAACCGATTTGTTTGCTGCT
LOC_Os04g31320
Os.6614.1.S1_at--888--5271Chr04:18550339..18550363 (25 bp)
GAATGATCTTGGCAGGTGTACCTCC
LOC_Os04g31320
Os.6614.1.S1_at--425--1051Chr04:18550352..18550376 (25 bp)
AGGTGTACCTCCATTGTCTGTCCAA
LOC_Os04g31320
Os.6614.1.S1_at--1144--7171Chr04:18550367..18550391 (25 bp)
GTCTGTCCAAACGAGTTATCTACTT
LOC_Os04g31320
Os.6614.1.S1_at--260--2871Chr04:18550407..18550431 (25 bp)
AAGTGATCCCTAACTACGGTGGCAG
LOC_Os04g31320
Os.6614.1.S1_at--127--2451Chr04:18550468..18550492 (25 bp)
AAAATGCTCTGTTCTAGTTACCTAA
LOC_Os04g31320
Os.6614.1.S1_at--621--791Chr04:18550507..18550531 (25 bp)
ATGTGGGCACAAGTTTTCTCTGTAT
LOC_Os04g31320
Os.6614.1.S1_at--417--3891Chr04:18550536..18550560 (25 bp)
CTGTGTGTGGCTTATCATTTGTCCC
LOC_Os04g31320
Target Sequence 
GCAGACTTCTATAATCAACCATGGGTTGAGGATGCTGTCATAAGATACCTGAACCGCAAACCGGCTAGCGGTAATGAGGG
CCCAGGCGGTGGTGCTGGTGGTTCATGAGGAAAGGGGTTGGTATTACTGTAGTGCCATTTTGGTGTAGAAACAAGCTATC
TGTTATGTACTAGTAAAAATTCAGATATGTTAGCGACAACCGATTTGTTTGCTGCTGTGAATGATCTTGGCAGGTGTACC
TCCATTGTCTGTCCAAACGAGTTATCTACTTGTATGATTATGTGATAAGTGATCCCTAACTACGGTGGCAGTNTGAATTG
TCATGCTAATTGCTAAATGCTGAAGGGAAAATGCTCTGTTCTAGTTACCTAACATATAGGTATTATATGTGGGCACAAGT
TTTCTCTGTATGATGCTGTGTGTGGCTTATCATTTGTCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6614.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis