Browse Element(s) Details


Os.6615.2.S1_x_at

Description gb:AK073210.1
DB_XREF= gi:32983233
TID=Os.6615.2
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6615 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033027A21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033005C22, full insert sequence.
FL= gb:AK073210.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5477011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54730Os.47600.1.S1_s_at11/112+33506102..33511848Transmembrane amino acid transporter protein, expressed
LOC_Os02g54730Os.47600.2.S1_x_at10/112+33506102..33511848Transmembrane amino acid transporter protein, expressed
LOC_Os02g54740OsAffx.15069.1.S1_at5/112+33512656..33517341retrotransposon protein, putative, unclassified
LOC_Os02g54740OsAffx.13657.1.S1_at1/112+33512656..33517341retrotransposon protein, putative, unclassified
LOC_Os02g54750NANA2+33520186..33520692retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g54760OsAffx.3074.1.S1_at11/112+33524761..33528832Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os02g54760Os.10910.1.A1_at11/112+33524761..33528832Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os02g54760Os.22706.1.S1_at7/112+33524761..33528832Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os02g54760OsAffx.15320.1.S1_x_at1/112+33524761..33528832Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os02g54770Os.6615.2.S1_at11/112+33535993..33540665RNA recognition motif family protein, expressed
LOC_Os02g54770Os.6615.2.S1_x_at11/112+33535993..33540665RNA recognition motif family protein, expressed
LOC_Os02g54770Os.6615.1.S1_at11/112+33535993..33540665RNA recognition motif family protein, expressed
LOC_Os02g54780Os.49865.1.S1_at11/112+33541427..33544549Protein CYPRO4, putative, expressed
LOC_Os02g54790Os.49661.1.S1_at8/112+33546302..33550653hypothetical protein
LOC_Os02g54800NANA2+33556054..33556542hypothetical protein
LOC_Os02g54810OsAffx.3075.1.S1_at10/112+33558559..33559082hypothetical protein
LOC_Os02g54820Os.12391.1.S1_a_at11/112+33563488..33568249trehalose-6-phosphate synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000398biological_processnuclear mRNA splicing, via spliceosome
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0016607cellular_componentnuclear speck
GO:0003676molecular_functionnucleic acid binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6615.2.S1_x_at--378--5551Chr02:33537586..33537610 (25 bp)
GAAACTGGGCACTTTGCTCGTGAAT
LOC_Os02g54770
Os.6615.2.S1_x_at--501--8991Chr02:33537566..33537590 (25 bp)
TGAATGTCGTTTGCGTATTGGTCCT
LOC_Os02g54770
Os.6615.2.S1_x_at--913--1091Chr02:33537145..33537169 (25 bp)
AGTGTTTCACCAGTTCGTGGGCGCA
LOC_Os02g54770
Os.6615.2.S1_x_at--66--1051Chr02:33537096..33537119 (24 bp)
AGGTGGTTCTCCTTATGCTGATGGA
LOC_Os02g54770
Os.6615.2.S1_x_at--507--5011Chr02:33536956..33536980 (25 bp)
GCAGGTACCGCCGTAGCAGGAGCTA
LOC_Os02g54770
Os.6615.2.S1_x_at--770--971Chr02:33536939..33536963 (25 bp)
AGGAGCTAGACCCTGATGCCTGTGC
LOC_Os02g54770
Os.6615.2.S1_x_at--863--9091Chr02:33536905..33536929 (25 bp)
TGCTCTTTGGCTTGCATGCCATGAA
LOC_Os02g54770
Os.6615.2.S1_x_at--618--7871Chr02:33536842..33536866 (25 bp)
GGTTTACTACTTTATCTGCCTTGAT
LOC_Os02g54770
Os.6615.2.S1_x_at--782--3811Chr02:33536827..33536851 (25 bp)
CTGCCTTGATATTTCAGCCTCTTAT
LOC_Os02g54770
Os.6615.2.S1_x_at--989--3371Chr02:33536813..33536837 (25 bp)
CAGCCTCTTATTTCTGACGTTAAAA
LOC_Os02g54770
Os.6615.2.S1_x_at--995--211Chr02:33536754..33536778 (25 bp)
ATATTACCTTTCTACTATGTGCTAA
LOC_Os02g54770
Target Sequence 
GAAACTGGGCACTTTGCTCGTGAATGTCGTTTGCGTATTGGTCCTGGAGGTCTGGGTAGTGGAAAGCGTCGTAGCAGGAG
TCGCAGCCGCAGTCGCAGCCCTCAATACCGCAAGAGCCCGACCTATGGTAGAAGAAGCTNCAGTCCTCGTGATCGCTCTC
CAAGGCGCCGCAGTGTTTCACCAGTTCGTGGGCGCAGCTACAGCAGGTCACCACGTGGCCGAGGTGGTTCTCCTTATGCT
GATGGAAGAGATGGTGGCAGGTACCGCCGTAGCAGGAGCTAGACCCTGATGCCTGTGCTTGACCGTCTGCTCTTTGGCTT
GCATGCCATGAATGCTTTAAGACTGGCATCAACTGATTGACTTCAATTAAGGTTTACTACTTTATCTGCCTTGATATTTC
AGCCTCTTATTTCTGACGTTAAAAAACTTATGGGATGGATGTAATATGCAACTAAGACATATTACCTTTCTACTATGTGC
TAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6615.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis