Browse Element(s) Details

Os.6617.1.S1_s_at

Description

gb:AK107774.1
DB_XREF= gi:32992983
TID=Os.6617.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6617 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-133-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-133-B10, full insert sequence.
FL= gb:AK119722.1 gb:AK107774.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os09g15520	11/11	Oleosin family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os09g15470	Os.27691.1.S1_x_at	4/11	9	+	9464788..9470500	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g15480	Os.14294.1.S1_at	11/11	9	+	9475481..9477841	Ser/Thr-rich protein T10 in DGCR region, putative, expressed
LOC_Os09g15490	NA	NA	9	+	9482798..9483515	hypothetical protein
LOC_Os09g15500	OsAffx.29854.1.S1_x_at	7/11	9	+	9485054..9486123	Peroxidase family protein
LOC_Os09g15500	OsAffx.29854.1.S1_at	6/11	9	+	9485054..9486123	Peroxidase family protein
LOC_Os09g15500	Os.28000.1.A1_x_at	4/11	9	+	9485054..9486123	Peroxidase family protein
LOC_Os09g15510	OsAffx.29854.1.S1_x_at	11/11	9	+	9489520..9491543	Peroxidase family protein, expressed
LOC_Os09g15510	OsAffx.29854.1.S1_at	11/11	9	+	9489520..9491543	Peroxidase family protein, expressed
LOC_Os09g15510	Os.28000.1.A1_x_at	4/11	9	+	9489520..9491543	Peroxidase family protein, expressed
LOC_Os09g15520	Os.6617.1.S1_s_at	11/11	9	+	9495345..9496052	Oleosin family protein, expressed
LOC_Os09g15530	OsAffx.29855.1.S1_at	11/11	9	+	9496190..9497538	hypothetical protein
LOC_Os09g15540	Os.56211.1.S1_at	11/11	9	+	9497903..9499492	F-box domain containing protein, expressed
LOC_Os09g15540	OsAffx.9167.1.S1_x_at	1/11	9	+	9497903..9499492	F-box domain containing protein, expressed
LOC_Os09g15550	Os.56250.1.S1_at	11/11	9	+	9500360..9501868	F-box domain containing protein, expressed
LOC_Os09g15560	Os.55706.1.S1_at	11/11	9	+	9504693..9506076	F-box domain containing protein, expressed
LOC_Os09g15570	OsAffx.29856.1.S1_at	11/11	9	+	9510313..9512124	F-box domain containing protein, expressed
LOC_Os09g15580	OsAffx.30126.2.S1_at	11/11	9	+	9513235..9516346	hypothetical protein
LOC_Os09g15580	OsAffx.30126.2.S1_x_at	10/11	9	+	9513235..9516346	hypothetical protein
LOC_Os09g15580	Os.16896.1.S1_at	5/11	9	+	9513235..9516346	hypothetical protein
LOC_Os09g15580	Os.36979.1.S1_x_at	3/11	9	+	9513235..9516346	hypothetical protein
LOC_Os09g15590	OsAffx.30125.1.S1_at	11/11	9	+	9517483..9523582	F-box domain containing protein, expressed
LOC_Os09g15590	OsAffx.8513.1.S1_s_at	1/11	9	+	9517483..9523582	F-box domain containing protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0019915	biological_process	sequestering of lipid
GO:0016020	cellular_component	membrane

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.6617.1.S1_s_at--223--585	1	Chr09:9495849..9495873 (25 bp)	GACCAGGCGCGCACCTAGAAAAATT	LOC_Os09g15520
Os.6617.1.S1_s_at--487--833	1	Chr09:9495854..9495878 (25 bp)	GGCGCGCACCTAGAAAAATTAGCTA	LOC_Os09g15520
Os.6617.1.S1_s_at--849--13	1	Chr09:9495871..9495895 (25 bp)	ATTAGCTACGGATTAGTTCAAATCA	LOC_Os09g15520
Os.6617.1.S1_s_at--135--675	1	Chr09:9495886..9495910 (25 bp)	GTTCAAATCAACTCGCCTATAGCTA	LOC_Os09g15520
Os.6617.1.S1_s_at--697--519	1	Chr09:9495917..9495941 (25 bp)	GCAATCACACATATGCATATGCCTT	LOC_Os09g15520
Os.6617.1.S1_s_at--1054--495	1	Chr09:9495931..9495955 (25 bp)	GCATATGCCTTCGTGTTTGTGTAAT	LOC_Os09g15520
Os.6617.1.S1_s_at--828--919	1	Chr09:9495936..9495960 (25 bp)	TGCCTTCGTGTTTGTGTAATGTTCC	LOC_Os09g15520
Os.6617.1.S1_s_at--305--913	1	Chr09:9495988..9496012 (25 bp)	TGCTGGATTGCTGGTACGGCGACAT	LOC_Os09g15520
Os.6617.1.S1_s_at--868--389	1	Chr09:9495998..9496022 (25 bp)	CTGGTACGGCGACATCTGAAATTTT	LOC_Os09g15520
Os.6617.1.S1_s_at--76--949	1	Chr09:9496012..9496036 (25 bp)	TCTGAAATTTTATACGACGTCGTGG	LOC_Os09g15520
Os.6617.1.S1_s_at--891--991	1	Chr09:9496024..9496048 (25 bp)	TACGACGTCGTGGTCTTAAATTTTG	LOC_Os09g15520

Target Sequence

GACCAGGCGCGCACCTAGAAAAATTAGCTACGGATTAGTTCAAATCAACTCGCCTATAGCTAGCTGATGCAATCACACAT
ATGCATATGCCTTCGTGTTTGTGTAATGTTCCGTGTGTGTACAATAATTAGTTGCAAAATGCTGGATTGCTGGTACGGCG
ACATCTGAAATTTTATACGACGTCGTGGTCTTAAATTTTG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis