Browse Element(s) Details


Os.663.1.S1_at

Description gb:AK070122.1
DB_XREF= gi:32980146
TID=Os.663.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.663 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023044A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023044A10, full insert sequence.
FL= gb:AK070122.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4325011/11seh1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43210Os.55650.1.A1_at6/111+25006438..25013558retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g43210OsAffx.21756.5.A1_x_at5/111+25006438..25013558retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g43210Os.52979.1.S1_at5/111+25006438..25013558retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g43210Os.7307.3.S1_x_at2/111+25006438..25013558retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g43210OsAffx.22143.1.S1_at2/111+25006438..25013558retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g43210OsAffx.4856.1.S1_x_at1/111+25006438..25013558retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g43210Os.22646.1.S1_x_at1/111+25006438..25013558retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g43220NANA1+25017379..25022910hypothetical protein
LOC_Os01g43230Os.37184.1.S1_at11/111+25022608..25024761expressed protein
LOC_Os01g43230OsAffx.23641.1.S1_at11/111+25022608..25024761expressed protein
LOC_Os01g43240OsAffx.23642.1.S1_at10/111+25026048..25028192hypothetical protein
LOC_Os01g43250Os.663.1.S1_at11/111+25030619..25035759seh1, putative, expressed
LOC_Os01g43260OsAffx.23643.1.S1_at11/111+25036563..25037242hypothetical protein
LOC_Os01g43270OsAffx.23644.1.S1_x_at11/111+25039018..25040460UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os01g43270OsAffx.23644.1.S1_at11/111+25039018..25040460UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os01g43274Os.51449.1.S1_at11/111+25041107..25041649expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.663.1.S1_at--400--5011Chr01:25032886..25032910 (25 bp)
GCAGGCTAGTTTTGCTATTGGTTTC
LOC_Os01g43250
Os.663.1.S1_at--652--5371Chr01:25032058..25032082 (25 bp)
GAAGAAGCTCACCAGCGTTGGCTCC
LOC_Os01g43250
Os.663.1.S1_at--1121--5911Chr01:25032025..25032049 (25 bp)
GAGCTTGGCTCACCTCAGGATAAGG
LOC_Os01g43250
Os.663.1.S1_at--717--6951Chr01:25031983..25032007 (25 bp)
GTAGCATGGGCTCCTAACATCGGCA
LOC_Os01g43250
Os.663.1.S1_at--149--5671Chr01:25030868..25030892 (25 bp)
GACATGGGCGGTATGACACTCGCAT
LOC_Os01g43250
Os.663.1.S1_at--579--5631Chr01:25030854..25030878 (25 bp)
GACACTCGCATCGACCGGAGGTGAT
LOC_Os01g43250
Os.663.1.S1_at--1142--6751Chr01:25030823..25030847 (25 bp)
GTTAAGCTATGGCAGGCTAACCTGA
LOC_Os01g43250
Os.663.1.S1_at--394--7331Chr01:25030775..25030799 (25 bp)
GTGCTTGACTGCAATGTGTCTCACT
LOC_Os01g43250
Os.663.1.S1_at--1016--7151Chr01:25030758..25030782 (25 bp)
GTCTCACTAGGGTTGCATATCTTTT
LOC_Os01g43250
Os.663.1.S1_at--993--6411Chr01:25030634..25030658 (25 bp)
GATCTCTTTCAATTATACTGTCGTG
LOC_Os01g43250
Os.663.1.S1_at--229--331Chr01:25030620..25030644 (25 bp)
ATACTGTCGTGCACGTGGTTGGTTT
LOC_Os01g43250
Target Sequence 
GCAGGCTAGTTTTGCTATTGGTTTCAATTCAGACTCTCCAAATTTCAACTCTTGTAAGATTTGGGAGTTCGAAGAAGCTC
ACCAGCGTTGGCTCCCCCTTGTTGAGCTTGGCTCACCTCAGGATAAGGGGGATATAGTGCATGCTGTAGCATGGGCTCCT
AACATCGGCAGACCATATGAGATCATAGCAGTTGCGACATGTAAAGGAATCGCAATCTGGCATATAGGCTTAAGCGCTGA
ATCTGACGGCAGCCTGTCAACTGAGAATGTGGCTGTACTTTCTGGCCATGATGGGGAGGTCCTGCAACTGGAATGGGACA
TGGGCGGTATGACACTCGCATCGACCGGAGGTGATGGCATGGTTAAGCTATGGCAGGCTAACCTGAATGGAGTTTGGCAT
GAACAAGCTGTGCTTGACTGCAATGTGTCTCACTAGGGTTGCATATCTTTTTTTTCTGGTTGGAACTGGGGCCTTGGGGG
ATTCCCAGCTCCCAAGTTGTGCAAACAAGCATTTAAGTGGATTGCTTATCNATGTTAAAGAATTCTGCAAGATCTCTTTC
AATTATACTGTCGTGCACGTGGTTGGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.663.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis