Browse Element(s) Details


Os.6646.1.S1_at

Description gb:AK073887.1
DB_XREF= gi:32983910
TID=Os.6646.1
CNT=24
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6646 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-023-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033075P09, full insert sequence.
FL= gb:AK073887.1 gb:AK104052.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3269011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32660Os.52571.1.A1_at11/119+19478243..19481680expressed protein
LOC_Os09g32670Os.18486.1.S1_at11/119+19485779..19487685NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g32680Os.187.1.S1_s_at11/119+19498552..19502722G1/S-specific cyclin C-type, putative, expressed
LOC_Os09g32680Os.187.1.S1_at11/119+19498552..19502722G1/S-specific cyclin C-type, putative, expressed
LOC_Os09g32690Os.6646.1.S1_at11/119+19502940..19506572Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g32690Os.8957.2.S1_x_at1/119+19502940..19506572Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g32700Os.27781.1.S1_at11/119+19506638..19508742expressed protein
LOC_Os09g32710Os.15502.1.S1_at11/119+19508826..19512260expressed protein
LOC_Os09g32730NANA9+19518988..19519617Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g32740Os.17307.1.S1_at11/119+19521706..19527377Ubiquitin carboxyl-terminal hydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6646.1.S1_at--700--2231Chr09:19503619..19503643 (25 bp)
ACAATTTGCGGCCATATCTTCTGCA
LOC_Os09g32690
Os.6646.1.S1_at--767--6051Chr09:19503533..19503557 (25 bp)
GAGGGCGAACAATTTCCACCGTATT
LOC_Os09g32690
Os.6646.1.S1_at--64--6891Chr09:19503513..19503537 (25 bp)
GTATTTACCTTCCAAACTCTGATAG
LOC_Os09g32690
Os.6646.1.S1_at--746--1511Chr09:19503315..19503339 (25 bp)
AGCAGCATCCTCCAATCTAATATAT
LOC_Os09g32690
Os.6646.1.S1_at--485--971Chr09:19503280..19503304 (25 bp)
AGGAGTTCTCCCATAACGTGTACCA
LOC_Os09g32690
Os.6646.1.S1_at--368--4991Chr09:19503211..19503235 (25 bp)
GCATGTTCATCCAAGGCTACTGTTG
LOC_Os09g32690
Os.6646.1.S1_at--2--5631Chr09:19503144..19503168 (25 bp)
GACAACTCTGGTTTAGGCTACCGAA
LOC_Os09g32690
Os.6646.1.S1_at--62--1151Chr09:19503077..19503101 (25 bp)
AGTCCCCATTGGTTAGATTTATCTA
LOC_Os09g32690
Os.6646.1.S1_at--109--591Chr09:19503029..19503053 (25 bp)
ATGCGTTTGGCCATGTACCTTACCT
LOC_Os09g32690
Os.6646.1.S1_at--250--10471Chr09:19503010..19503034 (25 bp)
TTACCTTCTCTCCATAGTTGTTGAC
LOC_Os09g32690
Os.6646.1.S1_at--423--6631Chr09:19502994..19503018 (25 bp)
GTTGTTGACGTAGCCTTGAATCAGC
LOC_Os09g32690
Target Sequence 
ACAATTTGCGGCCATATCTTCTGCACGACATGCATCAAGCAAGCCATCCAGATTCAGAAGAAATGCCCNTACTTGCAGAA
AGAGTCTGAGGGCGAACAATTTCCACCGTATTTACCTTCCAAACTCTGATAGTTAAGGCTCATTGGATGTACCAAAGGAA
CTTCTGGCAGCAGCAGCAGCATCCTCCAATCTAATATATTCAGAGGAACAGGAGTTCTCCCATAACGTGTACCATTTTGC
TGTGGAATTGTGTCACGGCAAAATGACCACCTAGACCCGCATGTTCATCCAAGGCTACTGTTGTTTGTATGTAGATGCAT
CACCAGGAGCTCATCAGCTGCAGGTGACAACTCTGGTTTAGGCTACCGAATGGCCTCTCTGCCTCCAAAGGATACACAAC
AAAACTAACTATAGTCCCCATTGGTTAGATTTATCTAGTTTGTGTACTGTTGTATTTACCATGCGTTTGGCCATGTACCT
TACCTTCTCTCCATAGTTGTTGACGTAGCCTTGAATCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6646.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis