Browse Element(s) Details


Os.6802.1.S1_at

Description gb:AU161680
DB_XREF= gi:10931406
DB_XREF=AU161680
CLONE=S4096
TID=Os.6802.1
CNT=40
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.6802 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative RIC1_ORYSA RAS-RELATED PROTEIN RIC1 (B1144D11.24), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3780011/11Ras-related protein RIC1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37760Os.19115.1.S1_at11/111+21445766..21451610Glutamate/Leucine/Phenylalanine/Valine dehydrogenase family protein, expressed
LOC_Os01g37770Os.49606.1.S1_at11/111+21451791..21455204RWD domain containing protein, expressed
LOC_Os01g37770Os.22790.1.A1_x_at11/111+21451791..21455204RWD domain containing protein, expressed
LOC_Os01g37780OsAffx.8975.1.S1_at11/111+21461764..21463263hypothetical protein
LOC_Os01g37790Os.20002.1.S1_at11/111+21465717..21469941expressed protein
LOC_Os01g37800Os.6802.1.S1_at11/111+21470348..21473223Ras-related protein RIC1, putative, expressed
LOC_Os01g37800Os.57451.1.S1_x_at3/111+21470348..21473223Ras-related protein RIC1, putative, expressed
LOC_Os01g37810OsAffx.23546.1.S1_at11/111+21477308..21477697expressed protein
LOC_Os01g37820Os.38090.2.S1_x_at11/111+21478387..21482486expressed protein
LOC_Os01g37820Os.38090.1.S1_at11/111+21478387..21482486expressed protein
LOC_Os01g37825Os.6069.1.S1_at11/111+21488749..21494266peptidase M16 family protein, putative, expressed
LOC_Os01g37832OsAffx.11366.1.S1_at11/111+21494720..21499508GM14633p, putative, expressed
LOC_Os01g37832Os.13544.1.S1_x_at11/111+21494720..21499508GM14633p, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006888biological_processER to Golgi vesicle-mediated transport
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6802.1.S1_at--439--2951Chr01:21470988..21471011 (24 bp)
AAGGCCCTTGCTGATGAGATTGGAA
LOC_Os01g37800
Os.6802.1.S1_at--618--8211Chr01:21470967..21470991 (25 bp)
GGAATACCATTCCTGGAGACCAGTG
LOC_Os01g37800
Os.6802.1.S1_at--1117--7991Chr01:21470692..21470716 (25 bp)
GGATGGCAAGCCAACCGGCTACAAA
LOC_Os01g37800
Os.6802.1.S1_at--490--2731Chr01:21470664..21470688 (25 bp)
AAGCAAGCCTGCAACCGTGCAAATG
LOC_Os01g37800
Os.6802.1.S1_at--208--7351Chr01:21470648..21470672 (25 bp)
GTGCAAATGCGAGGCCAACCTGTTG
LOC_Os01g37800
Os.6802.1.S1_at--499--5071Chr01:21470614..21470638 (25 bp)
GCAGCTGCTGCTCTTGATTATCAAT
LOC_Os01g37800
Os.6802.1.S1_at--242--6871Chr01:21470568..21470592 (25 bp)
GTTTGTGCACCAAGCAACACTTAAT
LOC_Os01g37800
Os.6802.1.S1_at--1081--2031Chr01:21470550..21470574 (25 bp)
ACTTAATTGGTTGCTCTATCCCTGT
LOC_Os01g37800
Os.6802.1.S1_at--343--2711Chr01:21470499..21470523 (25 bp)
AAGCTTGATGTGTTCTGTGTCGGAT
LOC_Os01g37800
Os.6802.1.S1_at--774--4471Chr01:21470422..21470446 (25 bp)
GCCTGTTTTAACTGCCTGTTCATAT
LOC_Os01g37800
Os.6802.1.S1_at--339--6831Chr01:21470391..21470415 (25 bp)
GTTTCAAGTGGCATCGATGTTCGAC
LOC_Os01g37800
Target Sequence 
AAGGCCCTTGCTGATGAGATTGGAATACCATTCCTGGAGACCAGTGCGAAGGATGCAACAAATGTGGAGAAGGCATTCAT
GACCATGGCAGGAGAGATAAAGAACAGGATGGCAAGCCAACCGGCTACAAATGCAAGCAAGCCTGCAACCGTGCAAATGC
GAGGCCAACCTGTTGCCCAGCAAAGCAGCTGCTGCTCTTGATTATCAATCTAGATCACAATAGTGTGCTTGTTTGTGCAC
CAAGCAACACTTAATTGGTTGCTCTATCCCTGTAAATTAAGTCTATTAGTACTATCAAAAAGCTTGATGTGTTCTGTGTC
GGATATTATTGGAAAAAGTCTGTCCCCTAACTGTAACGAAGCGGCAGATGCTGTGGGCCTGTTTTAACTGCCTGTTCATA
TTTCTATGTTTCAAGTGGCATCGATGTTCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6802.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis