Browse Element(s) Details


Os.6875.1.S1_at

Description gb:AK060949.1
DB_XREF= gi:32970967
TID=Os.6875.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6875 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023019M19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-201-F05, full insert sequence.
FL= gb:AK060949.1 gb:AK099097.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5714011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57100Os.7300.1.S1_at11/113+32493480..32499105Serologically defined breast cancer antigen NY-BR-84, putative, expressed
LOC_Os03g57110Os.20638.1.S2_at11/113+32499285..32504041expressed protein
LOC_Os03g57110Os.20638.1.S1_at11/113+32499285..32504041expressed protein
LOC_Os03g57120Os.141.1.S1_at11/113+32505395..32508261Ferredoxin-NADP reductase, root isozyme, chloroplast precursor, putative, expressed
LOC_Os03g57130OsAffx.26384.5.S1_x_at11/113+32508990..32514958Cell differentiation protein rcd1, putative, expressed
LOC_Os03g57140Os.6875.1.S1_at11/113+32520911..32523519expressed protein
LOC_Os03g57160Os.24550.1.S1_at11/113+32530682..32537963expressed protein
LOC_Os03g57170Os.49156.1.S1_at10/113+32538196..32541150LEM3 family/CDC50 family protein, expressed
LOC_Os03g57180OsAffx.25741.1.S1_at11/113+32542335..32542706hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008219biological_processcell death
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0010175molecular_functionsphingosine transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6875.1.S1_at--217--9911Chr03:32521781..32521922 (25 bp)
TACTGGTTACAGAGGGCAACTCCTT
LOC_Os03g57140
Os.6875.1.S1_at--791--6671Chr03:32521686..32521710 (25 bp)
GTTGCTGCTGGAATGTACGCCCTTC
LOC_Os03g57140
Os.6875.1.S1_at--880--5691Chr03:32521251..32521275 (25 bp)
GACTTTCATCAGAGCATCTGGACCA
LOC_Os03g57140
Os.6875.1.S1_at--1083--9451Chr03:32521235..32521259 (25 bp)
TCTGGACCAGTAATTCTCTACGTTG
LOC_Os03g57140
Os.6875.1.S1_at--684--2351Chr03:32521166..32521190 (25 bp)
AAAGCCTACTTATCCACTTCGAATG
LOC_Os03g57140
Os.6875.1.S1_at--306--10031Chr03:32521129..32521153 (25 bp)
TAGACGGTGTCAATACGCACGCTTT
LOC_Os03g57140
Os.6875.1.S1_at--523--5091Chr03:32521113..32521137 (25 bp)
GCACGCTTTGTATGTACTGATCCAA
LOC_Os03g57140
Os.6875.1.S1_at--939--1231Chr03:32521055..32521079 (25 bp)
AGTTGTATCTGGTTTCGACCTGTTA
LOC_Os03g57140
Os.6875.1.S1_at--906--9791Chr03:32521028..32521052 (25 bp)
TAAGCTTCAGTCTATGCGAATCAGC
LOC_Os03g57140
Os.6875.1.S1_at--270--5251Chr03:32521011..32521035 (25 bp)
GAATCAGCTCAGTGATTGACCTGCT
LOC_Os03g57140
Os.6875.1.S1_at--461--8931Chr03:32520995..32521019 (25 bp)
TGACCTGCTGTGCTGTTCTGGATGC
LOC_Os03g57140
Target Sequence 
TACTGGTTACAGAGGGCAACTCCTTAAGGGATGCAGCATCTAAGGCTTATGCTCAGGTTTTTGCTCCTCACCATGGGTGG
GCCATAAGGAAAGCCGTTGCTGCTGGAATGTACGCCCTTCCCTCAAAATCGCAGCTCCTGAAGAAATTGAATGAAGATGA
AAATTCGGCAAAGGTTCAAATGCAGACTTTCATCAGAGCATCTGGACCAGTAATTCTCTACGTTGAAGATCTGTTTACCT
CAAGGAATTTAGGCATGGACTGGTGAACCNAAAGCCTACTTATCCACTTCGAATGTACTAATCCAATTAGACGGTGTCAA
TACGCACGCTTTGTATGTACTGATCCAATATGATGGTGTGCTTTGAGCTATGACTACAATCAGTTGTATCTGGTTTCGAC
CTGTTAAATAAGCTTCAGTCTATGCGAATCAGCTCAGTGATTGACCTGCTGTGCTGTTCTGGATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6875.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis