Browse Element(s) Details


Os.7025.1.S1_s_at

Description gb:AU162175
DB_XREF= gi:11025574
DB_XREF=AU162175
CLONE=E0617
TID=Os.7025.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.7025 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4258011/11carboxyvinyl-carboxyphosphonate phosphorylmutase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42520Os.7457.1.S1_a_at11/114+24946595..24951654Adenine phosphoribosyltransferase 2, putative, expressed
LOC_Os04g42530OsAffx.4057.1.S1_at11/114+24955169..24955534hypothetical protein
LOC_Os04g42540Os.5770.1.S1_at11/114+24955687..24956651expressed protein
LOC_Os04g42550OsAffx.26431.1.S1_at11/114+24959247..24959735hypothetical protein
LOC_Os04g42560OsAffx.28660.1.S1_at1/114+24960766..24961059hypothetical protein
LOC_Os04g42560OsAffx.28660.1.S1_x_at1/114+24960766..24961059hypothetical protein
LOC_Os04g42570OsAffx.4058.1.S1_x_at11/114+24963397..24967270AP2 domain containing protein
LOC_Os04g42570OsAffx.23957.2.S1_x_at1/114+24963397..24967270AP2 domain containing protein
LOC_Os04g42570Os.55217.1.S1_at1/114+24963397..24967270AP2 domain containing protein
LOC_Os04g42580Os.7025.1.S1_s_at11/114+24968781..24972481carboxyvinyl-carboxyphosphonate phosphorylmutase, putative, expressed
LOC_Os04g42590Os.52657.1.S1_at11/114+24972383..24973850expressed protein
LOC_Os04g42590OsAffx.23890.4.S1_x_at1/114+24972383..24973850expressed protein
LOC_Os04g42600Os.38233.1.S2_at11/114+24974933..24982124Polyadenylate-binding protein 2, putative, expressed
LOC_Os04g42600Os.38233.1.S1_s_at11/114+24974933..24982124Polyadenylate-binding protein 2, putative, expressed
LOC_Os04g42600Os.38233.1.S2_s_at11/114+24974933..24982124Polyadenylate-binding protein 2, putative, expressed
LOC_Os04g42610Os.8398.1.S1_a_at11/114+24988714..24994819expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7025.1.S1_s_at--729--8291Chr04:24971996..24972020 (25 bp)
GGCTTCGAAATGCACCTATTGATTC
LOC_Os04g42580
Os.7025.1.S1_s_at--40--5471Chr04:24972033..24972057 (25 bp)
GAACGGTCAGATACTGCTTGATTTT
LOC_Os04g42580
Os.7025.1.S1_s_at--535--10771Chr04:24972092..24972116 (25 bp)
TTGAGTGAGCATGCCTGTTTTCCAT
LOC_Os04g42580
Os.7025.1.S1_s_at--769--10391Chr04:24972109..24972133 (25 bp)
TTTTCCATTTGCTGGCGCACTGCAA
LOC_Os04g42580
Os.7025.1.S1_s_at--224--651Chr04:24972141..24972165 (25 bp)
ATGCATGGACCTTCAAAGCGGCACC
LOC_Os04g42580
Os.7025.1.S1_s_at--1046--5211Chr04:24972235..24972259 (25 bp)
GAACTAATGGTTTCCTAGTCCCTCG
LOC_Os04g42580
Os.7025.1.S1_s_at--433--9311Chr04:24972253..24972277 (25 bp)
TCCCTCGATGCTACACCCAAATAAT
LOC_Os04g42580
Os.7025.1.S1_s_at--212--3191Chr04:24972278..24972302 (25 bp)
CAATCTAGATGTGTGCGTAGCTGCA
LOC_Os04g42580
Os.7025.1.S1_s_at--597--311Chr04:24972310..24972334 (25 bp)
ATACCATGCAGAGTATTTGCCCGGG
LOC_Os04g42580
Os.7025.1.S1_s_at--880--10271Chr04:24972325..24972349 (25 bp)
TTTGCCCGGGATTAGTCTGGTAGCC
LOC_Os04g42580
Os.7025.1.S1_s_at--600--151Chr04:24972335..24972359 (25 bp)
ATTAGTCTGGTAGCCTTTGCTTGCC
LOC_Os04g42580
Target Sequence 
GGCTTCGAAATGCACCTATTGATTCAGAAAACCCCCAGAACGGTCAGATACTGCTTGATTTTGAGGATGCTATGGGAGAT
AGGATCCAGGTGTTTATTGAGTGAGCATGCCTGTTTTCCATTTGCTGGCGCACTGCAAAATCCAAATGCATGGACCTTCA
AAGCGGCACCAGACTTCTTNTTGTTGTGAAAACCAGTGAACTAGTAAAATCCAACATTGATCATATGACCTGAAGTCATG
AACTAATGGTTTCCTAGTCCCTCGATGCTACACCCAAATAATCAATCTAGATGTGTGCGTAGCTGCACANTGCAATACCA
TGCAGAGTATTTGCCCGGGATTAGTCTGGTAGCCTTTGCTTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7025.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis