Browse Element(s) Details


Os.7031.1.S1_at

Description gb:AK100230.1
DB_XREF= gi:32985439
TID=Os.7031.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7031 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023049I19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023049I19, full insert sequence.
FL= gb:AK100230.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0445011/11SNARE-interacting protein KEULE, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g04380Os.6080.1.S1_at11/116+1871647..1874910Glycine cleavage T-protein containing protein, expressed
LOC_Os06g04390Os.11342.1.S1_at11/116+1875621..1879228expressed protein
LOC_Os06g04390OsAffx.16554.1.S1_at1/116+1875621..1879228expressed protein
LOC_Os06g04400OsAffx.27453.1.S1_at11/116+1883183..1883512hypothetical protein
LOC_Os06g04410OsAffx.4718.1.S1_at11/116+1890152..1891189hypothetical protein
LOC_Os06g04420OsAffx.4719.1.S1_at11/116+1892930..1893307Lipoxygenase 2, putative
LOC_Os06g04430OsAffx.15260.1.S1_at11/116+1896434..1896853hypothetical protein
LOC_Os06g04440OsAffx.27454.1.S1_at11/116+1898595..1899626hypothetical protein
LOC_Os06g04450Os.7031.1.S1_at11/116+1899883..1907931SNARE-interacting protein KEULE, putative, expressed
LOC_Os06g04460Os.13555.1.S1_at11/116+1908682..1912018hypersensitive-induced reaction protein 4, putative, expressed
LOC_Os06g04470Os.22672.1.S1_at11/116+1913175..1917037expressed protein
LOC_Os06g04480Os.56019.1.S1_at11/116+1921430..1922594expressed protein
LOC_Os06g04490OsAffx.4720.1.S1_x_at11/116+1923874..1924299hypothetical protein
LOC_Os06g04500NANA6+1926467..1927636ER-derived vesicles protein ERV14, putative
LOC_Os06g04510Os.21318.1.S1_at11/116+1930302..1935378Enolase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000910biological_processcytokinesis
GO:0006886biological_processintracellular protein transport
GO:0009306biological_processprotein secretion
GO:0000300cellular_componentperipheral to membrane of membrane fraction
GO:0005802cellular_componentGolgi trans face
GO:0005829cellular_componentcytosol
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7031.1.S1_at--1090--31Chr06:1900760..1900784 (25 bp)
ATTGTCCTGGGATCTTCTAGCATAG
LOC_Os06g04450
Os.7031.1.S1_at--337--1291Chr06:1900737..1900761 (25 bp)
AGATGACCCTCCACAATTTATTTCG
LOC_Os06g04450
Os.7031.1.S1_at--695--1291Chr06:1900527..1900551 (25 bp)
AGATGCTAACTGCAGGTGGTGCCAA
LOC_Os06g04450
Os.7031.1.S1_at--843--7491Chr06:1900512..1900536 (25 bp)
GTGGTGCCAATGACGTCTAAACTTC
LOC_Os06g04450
Os.7031.1.S1_at--236--9791Chr06:1900298..1900320 (23 bp)
TAAGAAACCCATTGCTACGAACAGT
LOC_Os06g04450
Os.7031.1.S1_at--701--6951Chr06:1900158..1900182 (25 bp)
GTAGACAACATATTTTGCCCACATT
LOC_Os06g04450
Os.7031.1.S1_at--540--1231Chr06:1900100..1900124 (25 bp)
AGTTGCGACAGTTGTTTTGCCCAAA
LOC_Os06g04450
Os.7031.1.S1_at--875--7371Chr06:1900041..1900065 (25 bp)
GTGACGATTACACTCATGGATCAAT
LOC_Os06g04450
Os.7031.1.S1_at--487--3031Chr06:1900019..1900043 (25 bp)
AATCGATTCCGATAATTCGTCGTGA
LOC_Os06g04450
Os.7031.1.S1_at--484--7291Chr06:1899954..1899978 (25 bp)
GTGCGAATGTGCGACTTTATAGGCT
LOC_Os06g04450
Os.7031.1.S1_at--13--1231Chr06:1899916..1899940 (25 bp)
AGTTCAATGTGTATCGTATCTGTCG
LOC_Os06g04450
Target Sequence 
ATTGTCCTGGGATCTTCTAGCATAGATGACCCTCCACAATTTATTTCGAAGCTGAAGATGCTAACTGCAGGTGGTGCCAA
TGACGTCTAAACTTCGCACTTAGTTTGCAAATCAACCGATGAAACAAACTTGTCACCTTTTGGTAAGAAACCCATTGCTA
CGAACAGTTAGAAACGTTGGATGTCATCAATGACTGGACTACTCACAATAATTACACGATTTTTTCATAGTCTAGTATAT
ATACCAAGTGAGAAGAAGTGTCAAATGTACTTAAAACATGTATGTAGACAACATATTTTGCCCACATTATTTATTCTTCT
TTCAGATGTAAAACGTAGAACAGTTGCGACAGTTGTTTTGCCCAAATTTGTATATTTATGAACACTACAACAATGACATG
GTGACGATTACACTCATGGATCAATCGATTCCGATAATTCGTCGTGAAATCGAGTTATTTATGGCGATGTGGAAAATGGT
TATAGAGGTGCGAATGTGCGACTTTATAGGCTAGTTATAGATGTAAGTTCAATGTGTATCGTATCTGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7031.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis