Browse Element(s) Details


Os.7053.1.S1_at

Description gb:AK121856.1
DB_XREF= gi:37991479
TID=Os.7053.1
CNT=19
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.7053 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs AU093915(E1276),AU162319(E60301)~similar to cytosolic factor~unknown protein (P0648C09.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033102G02, full insert sequence.
FL= gb:AK121856.1 gb:AK073077.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6538011/11Patellin-5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65360OsAffx.23923.1.S1_at11/111+38254254..38256080hypothetical protein
LOC_Os01g65370Os.37103.1.S1_at11/111+38259107..38260222Myb-like DNA-binding domain containing protein
LOC_Os01g65370Os.57514.1.S1_x_at7/111+38259107..38260222Myb-like DNA-binding domain containing protein
LOC_Os01g65380Os.7053.1.S1_s_at11/111+38275729..38278807Patellin-5, putative, expressed
LOC_Os01g65380Os.7053.1.S1_at11/111+38275729..38278807Patellin-5, putative, expressed
LOC_Os01g65400Os.24034.1.S1_a_at11/111+38281940..382858505'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
LOC_Os01g65400Os.24034.3.S1_x_at11/111+38281940..382858505'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
LOC_Os01g65400Os.24034.2.S1_x_at11/111+38281940..382858505'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
LOC_Os01g65410Os.5420.1.S1_at11/111+38289408..38293657Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os01g65420Os.37438.1.S1_at11/111+38295821..38297183expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7053.1.S1_at--1067--9171Chr01:38278263..38278287 (25 bp)
TGCCGAGGGTGGATACACAGTCATC
LOC_Os01g65380
Os.7053.1.S1_at--1101--6131Chr01:38278267..38278291 (25 bp)
GAGGGTGGATACACAGTCATCGTGC
LOC_Os01g65380
Os.7053.1.S1_at--209--7731Chr01:38278270..38278294 (25 bp)
GGTGGATACACAGTCATCGTGCAGA
LOC_Os01g65380
Os.7053.1.S1_at--674--7951Chr01:38278273..38278297 (25 bp)
GGATACACAGTCATCGTGCAGAAAA
LOC_Os01g65380
Os.7053.1.S1_at--44--9851Chr01:38278276..38278300 (25 bp)
TACACAGTCATCGTGCAGAAAACGA
LOC_Os01g65380
Os.7053.1.S1_at--126--4012Chr06:25517894..25517914 (21 bp)
CGTGCAGAAAACGAGGAAGGTGCCT
NONE
Os.7053.1.S1_at--901--1031Chr01:38278304..38278328 (25 bp)
AGGTGCCTGCAAATGAGGAACCAAT
LOC_Os01g65380
Os.7053.1.S1_at--1027--4411Chr01:38278308..38278332 (25 bp)
GCCTGCAAATGAGGAACCAATCATG
LOC_Os01g65380
Os.7053.1.S1_at--967--3191Chr01:38278344..38278368 (25 bp)
CAAGGTTGGCGAGCCAGGAAAGATT
LOC_Os01g65380
Os.7053.1.S1_at--65--8391Chr01:38278351..38278375 (25 bp)
GGCGAGCCAGGAAAGATTGTGCTAA
LOC_Os01g65380
Os.7053.1.S1_at--1126--3471Chr01:38278358..38278382 (25 bp)
CAGGAAAGATTGTGCTAACGATCAA
LOC_Os01g65380
Target Sequence 
TGCCGAGGGTGGATACACAGTCATCGTGCAGAAAACGAGGAAGGTGCCTGCAAATGAGGAACCAATCATGAAAGGCAGCT
TCAAGGTTGGCGAGCCAGGAAAGATTGTGCTAACGATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7053.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis