Browse Element(s) Details


Os.7102.1.S1_at

Description gb:CR279243
DB_XREF= gi:44665809
DB_XREF=CR279243
CLONE=y696f12p3
TID=Os.7102.1
CNT=45
FEA=FLmRNA
TIER=Stack
STK=11
UG=Os.7102 (NCBI UniGene Cluster)
UG_TITLE=Cysteine synthase (rcs3) mRNA, complete cds
FL= gb:AK071279.1 gb:AF073697.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5365011/11Cysteine synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53600Os.6095.1.S1_at11/113+30686876..30690666HTH DNA-binding protein, putative, expressed
LOC_Os03g53610NANA3+30691265..30692175Seed maturation protein
LOC_Os03g53620Os.55399.1.S1_at11/113+30693515..30694380Seed maturation protein, expressed
LOC_Os03g53630Os.10544.1.S2_at11/113+30698003..30706129acetyltransferase, GNAT family protein, expressed
LOC_Os03g53630Os.10544.1.S1_at10/113+30698003..30706129acetyltransferase, GNAT family protein, expressed
LOC_Os03g53640Os.20176.1.S1_at11/113+30706199..30707865expressed protein
LOC_Os03g53650Os.7102.1.S1_at11/113+30710412..30714085Cysteine synthase, putative, expressed
LOC_Os03g53660Os.46743.3.S1_a_at11/113+30714994..30724355myosin family protein, putative, expressed
LOC_Os03g53670Os.9822.2.S1_a_at11/113+30728128..30732240YT521-B-like family protein, expressed
LOC_Os03g53680NANA3+30738028..30738258hypothetical protein
LOC_Os03g53690Os.55539.1.S1_at11/113+30738832..30739853NAD dependent epimerase/dehydratase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006535biological_processcysteine biosynthesis from serine
GO:0019344biological_processcysteine biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0009536cellular_componentplastid
GO:0004124molecular_functioncysteine synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7102.1.S1_at--1028--8171Chr03:30712754..30712987 (25 bp)
GGAAGACCTGGTCCACACAAAATCC
LOC_Os03g53650
Os.7102.1.S1_at--139--10271Chr03:30713005..30713029 (25 bp)
TTTGTTCCTGGTGTACTTGATGTCA
LOC_Os03g53650
Os.7102.1.S1_at--508--2071Chr03:30713019..30713043 (25 bp)
ACTTGATGTCAATCTCCTGGATGAA
LOC_Os03g53650
Os.7102.1.S1_at--76--9651Chr03:30713396..30713420 (25 bp)
TCAGCATGGCGAAGCAGCTAGCGTT
LOC_Os03g53650
Os.7102.1.S1_at--3--2891Chr03:30713426..30713545 (25 bp)
AAGGGCTGCTGGTTGGGATCTCATC
LOC_Os03g53650
Os.7102.1.S1_at--1067--8631Chr03:30713534..30713558 (25 bp)
TGGGATCTCATCTGGTGCTGCTGCA
LOC_Os03g53650
Os.7102.1.S1_at--648--2691Chr03:30713601..30713759 (25 bp)
AAGCTCGTAGTTGTGGTCTTCCCGA
LOC_Os03g53650
Os.7102.1.S1_at--37--5471Chr03:30713838..30713862 (25 bp)
GAACGGCTCCAGCATTGTGCAAATT
LOC_Os03g53650
Os.7102.1.S1_at--624--6011Chr03:30713888..30713912 (25 bp)
GAGAGAATGGCGTCCCGAGTGCATT
LOC_Os03g53650
Os.7102.1.S1_at--744--191Chr03:30713910..30713934 (25 bp)
ATTTCTTCATGTTGGTCGCACTTGC
LOC_Os03g53650
Os.7102.1.S1_at--1092--3311Chr03:30713928..30713952 (25 bp)
CACTTGCCATCATGTAGTCGCTTGA
LOC_Os03g53650
Target Sequence 
GGAAGACCTGGTCCACACAAAATCCAAGGTATAGGTGCTGGTTTTGTTCCTGGTGTACTTGATGTCAATCTCCTGGATGA
AGTGGTCCAAGTCTCAAGTGATGAAGCCATCAGCATGGCGAAGCAGCTAGCGTTGAAAGAAGGGCTGCTGGTTGGGATCT
CATCTGGTGCTGCTGCAGTCGCTGCCATCAGGGTCGCGCAGCGGCCCGAGAACAAAGGGAAGCTCGTAGTTGTGGTCTTC
CCGAGCTTCGGTGAGCGCTACCTGTCGTCTGTCCTCTTCGAATCGATCAAGAGGGAGGCCGAAAACATGGTGTTCGAGCC
ATGAACGGCTCCAGCATTGTGCAAATTGTGCTTCCATGGTTTAGGGGGCTTGGAGAGAATGGCGTCCCGAGTGCATTTCT
TCATGTTGGTCGCACTTGCCATCATGTAGTCGCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7102.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis