Browse Element(s) Details


Os.7160.1.S1_at

Description gb:AK060926.1
DB_XREF= gi:32970944
TID=Os.7160.1
CNT=23
FEA=FLmRNA
TIER=FL+Stack
STK=11
UG=Os.7160 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023134P18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-035-H12, full insert sequence.
FL= gb:AK072721.1 gb:AK060926.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3010011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g30050OsAffx.21779.3.S1_at2/117+17721915..17724972retrotransposon protein, putative, unclassified
LOC_Os07g30050OsAffx.21779.2.S1_at1/117+17721915..17724972retrotransposon protein, putative, unclassified
LOC_Os07g30060NANA7+17729646..17731598hypothetical protein
LOC_Os07g30070NANA7+17732840..17735114retrotransposon protein, putative, unclassified
LOC_Os07g30080NANA7+17735367..17736244retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g30090Os.10075.1.S1_at11/117+17739083..17740619Actin-depolymerizing factor 1, putative, expressed
LOC_Os07g30100Os.7160.1.S1_at11/117+17742340..17753618Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g30110Os.52110.1.S1_at11/117+17765848..17769687expressed protein
LOC_Os07g30120Os.27433.1.S1_at9/117+17770977..17774813hypothetical protein
LOC_Os07g30130Os.26708.1.S1_at11/117+17775849..17778810P-type R2R3 Myb protein, putative, expressed
LOC_Os07g30130Os.53383.1.S1_x_at6/117+17775849..17778810P-type R2R3 Myb protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009626biological_processhypersensitive response
GO:0005886cellular_componentplasma membrane
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7160.1.S1_at--487--10671Chr07:17743094..17743118 (25 bp)
TTCCTCGAGGCCTGATGGTGCTTCA
LOC_Os07g30100
Os.7160.1.S1_at--371--3871Chr07:17743083..17743107 (25 bp)
CTGATGGTGCTTCAGCTGCTGGCTT
LOC_Os07g30100
Os.7160.1.S1_at--117--10711Chr07:17743060..17743084 (25 bp)
TTGCGGTTCCGAGGCACTGCAAGAC
LOC_Os07g30100
Os.7160.1.S1_at--131--8251Chr07:17743048..17743072 (25 bp)
GGCACTGCAAGACCCGCGAATGGTA
LOC_Os07g30100
Os.7160.1.S1_at--1034--10331Chr07:17742980..17743004 (25 bp)
TTTACCCCATATCCCTGACGAGCTA
LOC_Os07g30100
Os.7160.1.S1_at--447--10131Chr07:17742971..17742995 (25 bp)
TATCCCTGACGAGCTAATTATTGAG
LOC_Os07g30100
Os.7160.1.S1_at--1033--151Chr07:17742868..17742979 (25 bp)
ATTATTGAGGATCTGATGAGAACAA
LOC_Os07g30100
Os.7160.1.S1_at--461--4131Chr07:17742833..17742857 (25 bp)
CGCTACTGTAAATAATCTTCTGCTG
LOC_Os07g30100
Os.7160.1.S1_at--284--251Chr07:17742778..17742802 (25 bp)
ATATAAGCACGATGTTTACCGGCTA
LOC_Os07g30100
Os.7160.1.S1_at--559--5091Chr07:17742772..17742796 (25 bp)
GCACGATGTTTACCGGCTATAAGTT
LOC_Os07g30100
Os.7160.1.S1_at--101--5091Chr07:17742697..17742721 (25 bp)
GCACCTCTTGGTTCTTGTAATAAGT
LOC_Os07g30100
Target Sequence 
TTCCTCGAGGCCTGATGGTGCTTCAGCTGCTGGCTTGCGGTTCCGAGGCACTGCAAGACCCGCGAATGGTAGCATGTCGG
NGGTTCTCTCCATGGTAGATAGAGTACGAGAAGTTTTACCCCATATCCCTGACGAGCTAATTATTGAGGATCTGATGAGA
ACAAATAATATAAACGCTACTGTAAATAATCTTCTGCTGATGCAATAAAAGATAAACCAGCAATACAACATATAAGCACG
ATGTTTACCGGCTATAAGTTCATATATGAAAGGATGTATAGTTAAGTTAAAGACGAACCTGGGTGTCCAAGCACCTCTTG
GTTCTTGTAATAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7160.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis